Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28315

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28310 and AO356_28315 are separated by 95 nucleotidesAO356_28315 and AO356_28320 are separated by 410 nucleotides AO356_28310: AO356_28310 - coproporphyrinogen III oxidase, at 6,577,742 to 6,579,115 _28310 AO356_28315: AO356_28315 - hypothetical protein, at 6,579,211 to 6,579,654 _28315 AO356_28320: AO356_28320 - mannuronan epimerase, at 6,580,065 to 6,585,677 _28320 Position (kb) 6579 6580Strain fitness (log2 ratio) -1 0 1 2at 6578.268 kb on + strand, within AO356_28310at 6578.268 kb on + strand, within AO356_28310at 6578.268 kb on + strand, within AO356_28310at 6578.268 kb on + strand, within AO356_28310at 6578.268 kb on + strand, within AO356_28310at 6578.268 kb on + strand, within AO356_28310at 6578.268 kb on + strand, within AO356_28310at 6578.269 kb on - strand, within AO356_28310at 6578.269 kb on - strand, within AO356_28310at 6578.710 kb on - strand, within AO356_28310at 6579.180 kb on + strandat 6579.180 kb on + strandat 6579.180 kb on + strandat 6579.212 kb on + strandat 6579.224 kb on + strandat 6579.224 kb on + strandat 6579.225 kb on - strandat 6579.225 kb on - strandat 6579.225 kb on - strandat 6579.225 kb on - strandat 6579.225 kb on - strandat 6579.297 kb on - strand, within AO356_28315at 6579.297 kb on - strand, within AO356_28315at 6579.435 kb on - strand, within AO356_28315at 6579.937 kb on - strandat 6580.176 kb on + strandat 6580.176 kb on + strandat 6580.176 kb on + strandat 6580.176 kb on + strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.177 kb on - strandat 6580.194 kb on + strandat 6580.194 kb on + strandat 6580.194 kb on + strandat 6580.194 kb on + strandat 6580.195 kb on - strandat 6580.195 kb on - strandat 6580.254 kb on + strandat 6580.254 kb on + strandat 6580.255 kb on - strandat 6580.437 kb on + strandat 6580.459 kb on - strandat 6580.636 kb on - strand, within AO356_28320at 6580.636 kb on - strand, within AO356_28320at 6580.636 kb on - strand, within AO356_28320

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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6,578,268 + AO356_28310 0.38 +1.3
6,578,268 + AO356_28310 0.38 -0.1
6,578,268 + AO356_28310 0.38 -0.5
6,578,268 + AO356_28310 0.38 +0.4
6,578,268 + AO356_28310 0.38 +0.3
6,578,268 + AO356_28310 0.38 -0.8
6,578,268 + AO356_28310 0.38 +0.1
6,578,269 - AO356_28310 0.38 +1.1
6,578,269 - AO356_28310 0.38 +0.4
6,578,710 - AO356_28310 0.70 +0.7
6,579,180 + -0.4
6,579,180 + +1.0
6,579,180 + +0.1
6,579,212 + +0.4
6,579,224 + +1.1
6,579,224 + -0.2
6,579,225 - -0.4
6,579,225 - -0.4
6,579,225 - -1.4
6,579,225 - -0.5
6,579,225 - +1.9
6,579,297 - AO356_28315 0.19 +0.5
6,579,297 - AO356_28315 0.19 -0.3
6,579,435 - AO356_28315 0.50 -0.3
6,579,937 - +0.1
6,580,176 + +0.9
6,580,176 + -1.7
6,580,176 + -1.1
6,580,176 + +1.1
6,580,177 - +2.4
6,580,177 - +0.7
6,580,177 - +0.1
6,580,177 - -0.1
6,580,177 - +0.5
6,580,177 - +0.1
6,580,177 - +0.6
6,580,177 - +0.1
6,580,177 - -0.0
6,580,194 + +0.5
6,580,194 + +0.5
6,580,194 + +1.1
6,580,194 + +0.9
6,580,195 - -0.7
6,580,195 - +0.2
6,580,254 + +0.1
6,580,254 + -1.2
6,580,255 - +0.6
6,580,437 + -0.6
6,580,459 - +0.2
6,580,636 - AO356_28320 0.10 +0.9
6,580,636 - AO356_28320 0.10 -0.3
6,580,636 - AO356_28320 0.10 +1.1

Or see this region's nucleotide sequence