Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28310 and AO356_28315 are separated by 95 nucleotides AO356_28315 and AO356_28320 are separated by 410 nucleotides
AO356_28310: AO356_28310 - coproporphyrinogen III oxidase, at 6,577,742 to 6,579,115
_28310
AO356_28315: AO356_28315 - hypothetical protein, at 6,579,211 to 6,579,654
_28315
AO356_28320: AO356_28320 - mannuronan epimerase, at 6,580,065 to 6,585,677
_28320
Position (kb)
6579
6580 Strain fitness (log2 ratio)
-1
0
1
2 at 6578.268 kb on + strand, within AO356_28310 at 6578.268 kb on + strand, within AO356_28310 at 6578.268 kb on + strand, within AO356_28310 at 6578.268 kb on + strand, within AO356_28310 at 6578.268 kb on + strand, within AO356_28310 at 6578.268 kb on + strand, within AO356_28310 at 6578.268 kb on + strand, within AO356_28310 at 6578.269 kb on - strand, within AO356_28310 at 6578.269 kb on - strand, within AO356_28310 at 6578.710 kb on - strand, within AO356_28310 at 6579.180 kb on + strand at 6579.180 kb on + strand at 6579.180 kb on + strand at 6579.212 kb on + strand at 6579.224 kb on + strand at 6579.224 kb on + strand at 6579.225 kb on - strand at 6579.225 kb on - strand at 6579.225 kb on - strand at 6579.225 kb on - strand at 6579.225 kb on - strand at 6579.297 kb on - strand, within AO356_28315 at 6579.297 kb on - strand, within AO356_28315 at 6579.435 kb on - strand, within AO356_28315 at 6579.937 kb on - strand at 6580.176 kb on + strand at 6580.176 kb on + strand at 6580.176 kb on + strand at 6580.176 kb on + strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.177 kb on - strand at 6580.194 kb on + strand at 6580.194 kb on + strand at 6580.194 kb on + strand at 6580.194 kb on + strand at 6580.195 kb on - strand at 6580.195 kb on - strand at 6580.254 kb on + strand at 6580.254 kb on + strand at 6580.255 kb on - strand at 6580.437 kb on + strand at 6580.459 kb on - strand at 6580.636 kb on - strand, within AO356_28320 at 6580.636 kb on - strand, within AO356_28320 at 6580.636 kb on - strand, within AO356_28320
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 6,578,268 + AO356_28310 0.38 +1.3 6,578,268 + AO356_28310 0.38 -0.1 6,578,268 + AO356_28310 0.38 -0.5 6,578,268 + AO356_28310 0.38 +0.4 6,578,268 + AO356_28310 0.38 +0.3 6,578,268 + AO356_28310 0.38 -0.8 6,578,268 + AO356_28310 0.38 +0.1 6,578,269 - AO356_28310 0.38 +1.1 6,578,269 - AO356_28310 0.38 +0.4 6,578,710 - AO356_28310 0.70 +0.7 6,579,180 + -0.4 6,579,180 + +1.0 6,579,180 + +0.1 6,579,212 + +0.4 6,579,224 + +1.1 6,579,224 + -0.2 6,579,225 - -0.4 6,579,225 - -0.4 6,579,225 - -1.4 6,579,225 - -0.5 6,579,225 - +1.9 6,579,297 - AO356_28315 0.19 +0.5 6,579,297 - AO356_28315 0.19 -0.3 6,579,435 - AO356_28315 0.50 -0.3 6,579,937 - +0.1 6,580,176 + +0.9 6,580,176 + -1.7 6,580,176 + -1.1 6,580,176 + +1.1 6,580,177 - +2.4 6,580,177 - +0.7 6,580,177 - +0.1 6,580,177 - -0.1 6,580,177 - +0.5 6,580,177 - +0.1 6,580,177 - +0.6 6,580,177 - +0.1 6,580,177 - -0.0 6,580,194 + +0.5 6,580,194 + +0.5 6,580,194 + +1.1 6,580,194 + +0.9 6,580,195 - -0.7 6,580,195 - +0.2 6,580,254 + +0.1 6,580,254 + -1.2 6,580,255 - +0.6 6,580,437 + -0.6 6,580,459 - +0.2 6,580,636 - AO356_28320 0.10 +0.9 6,580,636 - AO356_28320 0.10 -0.3 6,580,636 - AO356_28320 0.10 +1.1
Or see this region's nucleotide sequence