Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28200 and AO356_28205 are separated by 2 nucleotides AO356_28205 and AO356_28210 are separated by 78 nucleotides
AO356_28200: AO356_28200 - macrolide transporter, at 6,444,518 to 6,446,479
_28200
AO356_28205: AO356_28205 - hemolysin secretion protein D, at 6,446,482 to 6,447,633
_28205
AO356_28210: AO356_28210 - hypothetical protein, at 6,447,712 to 6,478,635
_28210
Position (kb)
6446
6447
6448 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6445.569 kb on + strand, within AO356_28200 at 6445.569 kb on + strand, within AO356_28200 at 6445.569 kb on + strand, within AO356_28200 at 6445.569 kb on + strand, within AO356_28200 at 6445.570 kb on - strand, within AO356_28200 at 6445.570 kb on - strand, within AO356_28200 at 6445.840 kb on + strand, within AO356_28200 at 6445.841 kb on - strand, within AO356_28200 at 6445.841 kb on - strand, within AO356_28200 at 6445.891 kb on + strand, within AO356_28200 at 6445.891 kb on + strand, within AO356_28200 at 6445.892 kb on - strand, within AO356_28200 at 6446.143 kb on + strand, within AO356_28200 at 6446.228 kb on + strand, within AO356_28200 at 6446.229 kb on - strand, within AO356_28200 at 6446.229 kb on - strand, within AO356_28200 at 6446.282 kb on - strand, within AO356_28200 at 6446.318 kb on + strand at 6446.319 kb on - strand at 6446.712 kb on + strand, within AO356_28205 at 6446.737 kb on - strand, within AO356_28205 at 6446.737 kb on - strand, within AO356_28205 at 6446.780 kb on + strand, within AO356_28205 at 6446.780 kb on + strand, within AO356_28205 at 6446.781 kb on - strand, within AO356_28205 at 6446.781 kb on - strand, within AO356_28205 at 6446.781 kb on - strand, within AO356_28205 at 6446.870 kb on + strand, within AO356_28205 at 6446.871 kb on - strand, within AO356_28205 at 6446.907 kb on - strand, within AO356_28205 at 6446.951 kb on - strand, within AO356_28205 at 6447.059 kb on + strand, within AO356_28205 at 6447.179 kb on + strand, within AO356_28205 at 6447.179 kb on + strand, within AO356_28205 at 6447.251 kb on + strand, within AO356_28205 at 6447.251 kb on + strand, within AO356_28205 at 6447.251 kb on + strand, within AO356_28205 at 6447.251 kb on + strand, within AO356_28205 at 6447.252 kb on - strand, within AO356_28205 at 6447.420 kb on + strand, within AO356_28205 at 6447.421 kb on - strand, within AO356_28205 at 6447.633 kb on + strand at 6447.637 kb on + strand at 6447.638 kb on - strand at 6447.715 kb on + strand at 6447.716 kb on - strand at 6447.716 kb on - strand at 6447.716 kb on - strand at 6447.719 kb on + strand at 6447.719 kb on + strand at 6447.720 kb on - strand at 6447.784 kb on + strand at 6447.784 kb on + strand at 6447.784 kb on + strand at 6447.850 kb on - strand at 6447.975 kb on + strand at 6448.370 kb on + strand at 6448.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 6,445,569 + AO356_28200 0.54 -0.9 6,445,569 + AO356_28200 0.54 +0.4 6,445,569 + AO356_28200 0.54 +2.1 6,445,569 + AO356_28200 0.54 -1.5 6,445,570 - AO356_28200 0.54 -0.7 6,445,570 - AO356_28200 0.54 -2.3 6,445,840 + AO356_28200 0.67 +0.8 6,445,841 - AO356_28200 0.67 +0.1 6,445,841 - AO356_28200 0.67 -1.5 6,445,891 + AO356_28200 0.70 -0.3 6,445,891 + AO356_28200 0.70 -0.5 6,445,892 - AO356_28200 0.70 -2.9 6,446,143 + AO356_28200 0.83 +1.2 6,446,228 + AO356_28200 0.87 -1.7 6,446,229 - AO356_28200 0.87 +0.1 6,446,229 - AO356_28200 0.87 -0.9 6,446,282 - AO356_28200 0.90 -1.2 6,446,318 + -0.9 6,446,319 - +0.1 6,446,712 + AO356_28205 0.20 -0.5 6,446,737 - AO356_28205 0.22 -0.5 6,446,737 - AO356_28205 0.22 -1.7 6,446,780 + AO356_28205 0.26 -0.9 6,446,780 + AO356_28205 0.26 -1.2 6,446,781 - AO356_28205 0.26 -1.3 6,446,781 - AO356_28205 0.26 -1.3 6,446,781 - AO356_28205 0.26 +0.5 6,446,870 + AO356_28205 0.34 -1.7 6,446,871 - AO356_28205 0.34 -0.9 6,446,907 - AO356_28205 0.37 -0.9 6,446,951 - AO356_28205 0.41 -2.1 6,447,059 + AO356_28205 0.50 -1.0 6,447,179 + AO356_28205 0.61 -0.7 6,447,179 + AO356_28205 0.61 -0.3 6,447,251 + AO356_28205 0.67 -2.1 6,447,251 + AO356_28205 0.67 -1.0 6,447,251 + AO356_28205 0.67 -1.9 6,447,251 + AO356_28205 0.67 +0.1 6,447,252 - AO356_28205 0.67 -1.9 6,447,420 + AO356_28205 0.81 -0.6 6,447,421 - AO356_28205 0.82 -0.9 6,447,633 + +1.3 6,447,637 + -1.3 6,447,638 - -0.9 6,447,715 + -0.6 6,447,716 - -1.5 6,447,716 - -0.9 6,447,716 - -1.8 6,447,719 + -1.3 6,447,719 + -3.0 6,447,720 - +0.1 6,447,784 + +0.4 6,447,784 + -0.3 6,447,784 + -0.1 6,447,850 - +0.7 6,447,975 + +0.3 6,448,370 + -1.5 6,448,447 - +0.3
Or see this region's nucleotide sequence