Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27270 and AO356_27275 are separated by 144 nucleotides AO356_27275 and AO356_27280 overlap by 4 nucleotides AO356_27280 and AO356_27285 are separated by 147 nucleotides
AO356_27270: AO356_27270 - MFS transporter, at 6,215,847 to 6,217,265
_27270
AO356_27275: AO356_27275 - histidine kinase, at 6,217,410 to 6,218,834
_27275
AO356_27280: AO356_27280 - XRE family transcriptional regulator, at 6,218,831 to 6,219,493
_27280
AO356_27285: AO356_27285 - hypothetical protein, at 6,219,641 to 6,219,907
_27285
Position (kb)
6217
6218
6219 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6216.468 kb on + strand, within AO356_27270 at 6216.469 kb on - strand, within AO356_27270 at 6216.469 kb on - strand, within AO356_27270 at 6216.529 kb on + strand, within AO356_27270 at 6216.542 kb on - strand, within AO356_27270 at 6216.552 kb on + strand, within AO356_27270 at 6216.553 kb on - strand, within AO356_27270 at 6216.556 kb on - strand, within AO356_27270 at 6216.687 kb on - strand, within AO356_27270 at 6216.687 kb on - strand, within AO356_27270 at 6216.720 kb on + strand, within AO356_27270 at 6216.721 kb on - strand, within AO356_27270 at 6216.721 kb on - strand, within AO356_27270 at 6216.764 kb on + strand, within AO356_27270 at 6216.764 kb on + strand, within AO356_27270 at 6216.765 kb on - strand, within AO356_27270 at 6216.765 kb on - strand, within AO356_27270 at 6216.765 kb on - strand, within AO356_27270 at 6216.765 kb on - strand, within AO356_27270 at 6216.765 kb on - strand, within AO356_27270 at 6216.765 kb on - strand, within AO356_27270 at 6216.787 kb on + strand, within AO356_27270 at 6216.895 kb on + strand, within AO356_27270 at 6217.183 kb on + strand at 6217.183 kb on + strand at 6217.183 kb on + strand at 6217.184 kb on - strand at 6217.184 kb on - strand at 6217.257 kb on + strand at 6217.257 kb on + strand at 6217.258 kb on - strand at 6217.258 kb on - strand at 6217.411 kb on + strand at 6217.459 kb on + strand at 6217.460 kb on - strand at 6217.498 kb on - strand at 6217.498 kb on - strand at 6217.498 kb on - strand at 6217.520 kb on - strand at 6217.551 kb on - strand at 6217.560 kb on + strand, within AO356_27275 at 6217.561 kb on - strand, within AO356_27275 at 6217.561 kb on - strand, within AO356_27275 at 6217.698 kb on - strand, within AO356_27275 at 6217.909 kb on + strand, within AO356_27275 at 6217.909 kb on + strand, within AO356_27275 at 6217.910 kb on - strand, within AO356_27275 at 6218.130 kb on + strand, within AO356_27275 at 6218.130 kb on + strand, within AO356_27275 at 6218.208 kb on + strand, within AO356_27275 at 6218.400 kb on + strand, within AO356_27275 at 6218.576 kb on - strand, within AO356_27275 at 6218.632 kb on + strand, within AO356_27275 at 6218.719 kb on + strand at 6218.720 kb on - strand at 6218.849 kb on + strand at 6218.849 kb on + strand at 6218.850 kb on - strand at 6218.850 kb on - strand at 6218.929 kb on + strand, within AO356_27280 at 6218.958 kb on + strand, within AO356_27280 at 6219.421 kb on - strand, within AO356_27280 at 6219.579 kb on + strand at 6219.813 kb on - strand, within AO356_27285 at 6219.821 kb on + strand, within AO356_27285 at 6219.821 kb on + strand, within AO356_27285 at 6219.821 kb on + strand, within AO356_27285 at 6219.822 kb on - strand, within AO356_27285 at 6219.822 kb on - strand, within AO356_27285
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 6,216,468 + AO356_27270 0.44 +0.0 6,216,469 - AO356_27270 0.44 -0.5 6,216,469 - AO356_27270 0.44 +0.7 6,216,529 + AO356_27270 0.48 -0.4 6,216,542 - AO356_27270 0.49 +0.5 6,216,552 + AO356_27270 0.50 +0.4 6,216,553 - AO356_27270 0.50 -1.1 6,216,556 - AO356_27270 0.50 +0.0 6,216,687 - AO356_27270 0.59 +0.0 6,216,687 - AO356_27270 0.59 -1.8 6,216,720 + AO356_27270 0.62 +0.8 6,216,721 - AO356_27270 0.62 -0.5 6,216,721 - AO356_27270 0.62 +1.6 6,216,764 + AO356_27270 0.65 +0.0 6,216,764 + AO356_27270 0.65 +0.4 6,216,765 - AO356_27270 0.65 +0.5 6,216,765 - AO356_27270 0.65 +0.0 6,216,765 - AO356_27270 0.65 +0.9 6,216,765 - AO356_27270 0.65 +0.9 6,216,765 - AO356_27270 0.65 +0.0 6,216,765 - AO356_27270 0.65 -0.5 6,216,787 + AO356_27270 0.66 +0.5 6,216,895 + AO356_27270 0.74 +0.6 6,217,183 + +1.0 6,217,183 + +0.0 6,217,183 + -0.6 6,217,184 - +2.4 6,217,184 - -1.0 6,217,257 + +0.0 6,217,257 + -0.1 6,217,258 - +1.5 6,217,258 - -1.8 6,217,411 + +0.6 6,217,459 + -2.3 6,217,460 - +0.3 6,217,498 - -1.3 6,217,498 - +0.9 6,217,498 - -1.0 6,217,520 - +1.0 6,217,551 - +0.6 6,217,560 + AO356_27275 0.11 -0.5 6,217,561 - AO356_27275 0.11 -1.5 6,217,561 - AO356_27275 0.11 +0.4 6,217,698 - AO356_27275 0.20 +0.2 6,217,909 + AO356_27275 0.35 +0.2 6,217,909 + AO356_27275 0.35 -0.4 6,217,910 - AO356_27275 0.35 -0.6 6,218,130 + AO356_27275 0.51 +1.5 6,218,130 + AO356_27275 0.51 +0.3 6,218,208 + AO356_27275 0.56 +1.6 6,218,400 + AO356_27275 0.69 -0.5 6,218,576 - AO356_27275 0.82 +0.9 6,218,632 + AO356_27275 0.86 +1.7 6,218,719 + -0.2 6,218,720 - -2.1 6,218,849 + +0.4 6,218,849 + +0.0 6,218,850 - -1.3 6,218,850 - -0.5 6,218,929 + AO356_27280 0.15 +0.6 6,218,958 + AO356_27280 0.19 -0.4 6,219,421 - AO356_27280 0.89 +0.3 6,219,579 + +0.3 6,219,813 - AO356_27285 0.64 +1.0 6,219,821 + AO356_27285 0.67 +0.4 6,219,821 + AO356_27285 0.67 -0.3 6,219,821 + AO356_27285 0.67 -0.2 6,219,822 - AO356_27285 0.68 +0.9 6,219,822 - AO356_27285 0.68 +0.8
Or see this region's nucleotide sequence