Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27050

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27045 and AO356_27050 are separated by 193 nucleotidesAO356_27050 and AO356_27055 are separated by 93 nucleotides AO356_27045: AO356_27045 - MFS transporter, at 6,164,033 to 6,165,490 _27045 AO356_27050: AO356_27050 - hypothetical protein, at 6,165,684 to 6,165,962 _27050 AO356_27055: AO356_27055 - DNA helicase UvrD, at 6,166,056 to 6,168,524 _27055 Position (kb) 6165 6166Strain fitness (log2 ratio) -1 0 1 2at 6164.708 kb on + strand, within AO356_27045at 6164.709 kb on - strand, within AO356_27045at 6164.767 kb on - strand, within AO356_27045at 6164.933 kb on + strand, within AO356_27045at 6164.933 kb on + strand, within AO356_27045at 6164.933 kb on + strand, within AO356_27045at 6164.933 kb on + strand, within AO356_27045at 6164.934 kb on - strand, within AO356_27045at 6164.934 kb on - strand, within AO356_27045at 6164.934 kb on - strand, within AO356_27045at 6164.934 kb on - strand, within AO356_27045at 6164.934 kb on - strand, within AO356_27045at 6164.934 kb on - strand, within AO356_27045at 6165.160 kb on - strand, within AO356_27045at 6165.489 kb on - strandat 6165.489 kb on - strandat 6165.595 kb on - strandat 6165.614 kb on - strandat 6165.689 kb on + strandat 6165.710 kb on + strandat 6165.710 kb on + strandat 6165.710 kb on + strandat 6165.711 kb on - strandat 6165.711 kb on - strandat 6165.805 kb on + strand, within AO356_27050at 6165.806 kb on - strand, within AO356_27050at 6165.892 kb on + strand, within AO356_27050at 6165.892 kb on + strand, within AO356_27050at 6165.977 kb on + strandat 6165.978 kb on - strandat 6165.978 kb on - strandat 6166.035 kb on + strandat 6166.035 kb on + strandat 6166.035 kb on + strandat 6166.036 kb on - strandat 6166.036 kb on - strandat 6166.039 kb on - strandat 6166.110 kb on - strandat 6166.110 kb on - strandat 6166.110 kb on - strandat 6166.162 kb on + strandat 6166.162 kb on + strandat 6166.163 kb on - strandat 6166.163 kb on - strandat 6166.163 kb on - strandat 6166.201 kb on + strandat 6166.240 kb on + strandat 6166.283 kb on - strandat 6166.297 kb on + strandat 6166.332 kb on + strand, within AO356_27055at 6166.672 kb on + strand, within AO356_27055at 6166.673 kb on - strand, within AO356_27055at 6166.738 kb on + strand, within AO356_27055at 6166.739 kb on - strand, within AO356_27055at 6166.739 kb on - strand, within AO356_27055at 6166.739 kb on - strand, within AO356_27055at 6166.739 kb on - strand, within AO356_27055at 6166.739 kb on - strand, within AO356_27055at 6166.765 kb on + strand, within AO356_27055at 6166.765 kb on + strand, within AO356_27055at 6166.765 kb on + strand, within AO356_27055at 6166.765 kb on + strand, within AO356_27055at 6166.765 kb on + strand, within AO356_27055at 6166.765 kb on + strand, within AO356_27055at 6166.766 kb on - strand, within AO356_27055at 6166.896 kb on + strand, within AO356_27055at 6166.897 kb on - strand, within AO356_27055

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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6,164,708 + AO356_27045 0.46 -0.1
6,164,709 - AO356_27045 0.46 +0.5
6,164,767 - AO356_27045 0.50 -0.7
6,164,933 + AO356_27045 0.62 +0.4
6,164,933 + AO356_27045 0.62 +0.5
6,164,933 + AO356_27045 0.62 +0.4
6,164,933 + AO356_27045 0.62 +0.0
6,164,934 - AO356_27045 0.62 +0.3
6,164,934 - AO356_27045 0.62 -0.6
6,164,934 - AO356_27045 0.62 +0.5
6,164,934 - AO356_27045 0.62 +1.0
6,164,934 - AO356_27045 0.62 -1.3
6,164,934 - AO356_27045 0.62 -0.2
6,165,160 - AO356_27045 0.77 +0.5
6,165,489 - +0.6
6,165,489 - -0.5
6,165,595 - -0.2
6,165,614 - -0.1
6,165,689 + -0.4
6,165,710 + +0.4
6,165,710 + +2.2
6,165,710 + -0.4
6,165,711 - +0.6
6,165,711 - +0.6
6,165,805 + AO356_27050 0.43 +0.4
6,165,806 - AO356_27050 0.44 +0.2
6,165,892 + AO356_27050 0.75 +0.6
6,165,892 + AO356_27050 0.75 +2.2
6,165,977 + -1.4
6,165,978 - -0.1
6,165,978 - -0.8
6,166,035 + -1.3
6,166,035 + -1.0
6,166,035 + -0.2
6,166,036 - +0.0
6,166,036 - +0.8
6,166,039 - +0.4
6,166,110 - -0.8
6,166,110 - +0.5
6,166,110 - -0.4
6,166,162 + +0.8
6,166,162 + +0.0
6,166,163 - +0.0
6,166,163 - -0.1
6,166,163 - +0.7
6,166,201 + -0.3
6,166,240 + -1.4
6,166,283 - -0.2
6,166,297 + -0.3
6,166,332 + AO356_27055 0.11 -0.7
6,166,672 + AO356_27055 0.25 +0.3
6,166,673 - AO356_27055 0.25 -0.3
6,166,738 + AO356_27055 0.28 -0.2
6,166,739 - AO356_27055 0.28 +0.0
6,166,739 - AO356_27055 0.28 +0.6
6,166,739 - AO356_27055 0.28 -0.3
6,166,739 - AO356_27055 0.28 -1.0
6,166,739 - AO356_27055 0.28 +2.0
6,166,765 + AO356_27055 0.29 +2.0
6,166,765 + AO356_27055 0.29 +1.4
6,166,765 + AO356_27055 0.29 +0.0
6,166,765 + AO356_27055 0.29 +0.2
6,166,765 + AO356_27055 0.29 +1.3
6,166,765 + AO356_27055 0.29 +0.5
6,166,766 - AO356_27055 0.29 +1.4
6,166,896 + AO356_27055 0.34 -0.1
6,166,897 - AO356_27055 0.34 -0.3

Or see this region's nucleotide sequence