Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26535 and AO356_26540 overlap by 4 nucleotides AO356_26540 and AO356_26545 are separated by 11 nucleotides AO356_26545 and AO356_26550 are separated by 15 nucleotides
AO356_26535: AO356_26535 - superoxide dismutase, at 6,040,352 to 6,041,965
_26535
AO356_26540: AO356_26540 - antibiotic synthesis protein MbtH, at 6,041,962 to 6,042,183
_26540
AO356_26545: AO356_26545 - hypothetical protein, at 6,042,195 to 6,042,854
_26545
AO356_26550: AO356_26550 - transcription factor jumonji jmjC domain protein, at 6,042,870 to 6,043,994
_26550
Position (kb)
6041
6042
6043 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6041.123 kb on - strand, within AO356_26535 at 6041.157 kb on - strand, within AO356_26535 at 6041.429 kb on - strand, within AO356_26535 at 6041.455 kb on + strand, within AO356_26535 at 6041.455 kb on + strand, within AO356_26535 at 6041.455 kb on + strand, within AO356_26535 at 6041.484 kb on - strand, within AO356_26535 at 6041.598 kb on - strand, within AO356_26535 at 6041.626 kb on - strand, within AO356_26535 at 6041.626 kb on - strand, within AO356_26535 at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.817 kb on + strand at 6041.818 kb on - strand at 6041.818 kb on - strand at 6041.818 kb on - strand at 6041.822 kb on + strand at 6041.822 kb on + strand at 6041.823 kb on - strand at 6041.871 kb on + strand at 6041.908 kb on + strand at 6041.983 kb on - strand at 6042.047 kb on + strand, within AO356_26540 at 6042.104 kb on - strand, within AO356_26540 at 6042.104 kb on - strand, within AO356_26540 at 6042.148 kb on - strand, within AO356_26540 at 6042.271 kb on - strand, within AO356_26545 at 6042.339 kb on - strand, within AO356_26545 at 6042.339 kb on - strand, within AO356_26545 at 6042.369 kb on - strand, within AO356_26545 at 6042.401 kb on + strand, within AO356_26545 at 6042.402 kb on - strand, within AO356_26545 at 6042.437 kb on + strand, within AO356_26545 at 6042.437 kb on + strand, within AO356_26545 at 6042.459 kb on + strand, within AO356_26545 at 6042.492 kb on - strand, within AO356_26545 at 6042.499 kb on + strand, within AO356_26545 at 6042.499 kb on + strand, within AO356_26545 at 6042.564 kb on - strand, within AO356_26545 at 6042.747 kb on + strand, within AO356_26545 at 6042.902 kb on + strand at 6043.088 kb on - strand, within AO356_26550 at 6043.144 kb on + strand, within AO356_26550 at 6043.144 kb on + strand, within AO356_26550 at 6043.144 kb on + strand, within AO356_26550
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 6,041,123 - AO356_26535 0.48 -0.3 6,041,157 - AO356_26535 0.50 -0.1 6,041,429 - AO356_26535 0.67 +0.0 6,041,455 + AO356_26535 0.68 +0.0 6,041,455 + AO356_26535 0.68 -1.0 6,041,455 + AO356_26535 0.68 +0.2 6,041,484 - AO356_26535 0.70 +0.2 6,041,598 - AO356_26535 0.77 -0.2 6,041,626 - AO356_26535 0.79 +0.5 6,041,626 - AO356_26535 0.79 +0.4 6,041,817 + +0.0 6,041,817 + +0.6 6,041,817 + -0.2 6,041,817 + +0.4 6,041,817 + +0.5 6,041,818 - +0.6 6,041,818 - -0.1 6,041,818 - +0.4 6,041,822 + +0.2 6,041,822 + -0.7 6,041,823 - -0.2 6,041,871 + -0.3 6,041,908 + +0.5 6,041,983 - +0.5 6,042,047 + AO356_26540 0.38 +1.4 6,042,104 - AO356_26540 0.64 +0.3 6,042,104 - AO356_26540 0.64 +0.4 6,042,148 - AO356_26540 0.84 +0.3 6,042,271 - AO356_26545 0.12 -0.7 6,042,339 - AO356_26545 0.22 +1.6 6,042,339 - AO356_26545 0.22 -2.0 6,042,369 - AO356_26545 0.26 +0.0 6,042,401 + AO356_26545 0.31 +0.0 6,042,402 - AO356_26545 0.31 +1.4 6,042,437 + AO356_26545 0.37 +0.6 6,042,437 + AO356_26545 0.37 +0.3 6,042,459 + AO356_26545 0.40 +0.7 6,042,492 - AO356_26545 0.45 +0.8 6,042,499 + AO356_26545 0.46 -0.3 6,042,499 + AO356_26545 0.46 -0.2 6,042,564 - AO356_26545 0.56 -1.6 6,042,747 + AO356_26545 0.84 -0.7 6,042,902 + +2.2 6,043,088 - AO356_26550 0.19 -1.0 6,043,144 + AO356_26550 0.24 -0.7 6,043,144 + AO356_26550 0.24 +0.5 6,043,144 + AO356_26550 0.24 +2.3
Or see this region's nucleotide sequence