Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25975 and AO356_25980 are separated by 242 nucleotides AO356_25980 and AO356_25985 are separated by 295 nucleotides
AO356_25975: AO356_25975 - aldehyde dehydrogenase, at 5,870,822 to 5,872,447
_25975
AO356_25980: AO356_25980 - autotransporter subunit beta, at 5,872,690 to 5,873,604
_25980
AO356_25985: AO356_25985 - autotransporter, at 5,873,900 to 5,876,359
_25985
Position (kb) 5872
5873
5874 Strain fitness (log2 ratio) -1
0
1
2 at 5871.729 kb on + strand, within AO356_25975 at 5871.729 kb on + strand, within AO356_25975 at 5871.729 kb on + strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.730 kb on - strand, within AO356_25975 at 5871.889 kb on - strand, within AO356_25975 at 5872.014 kb on + strand, within AO356_25975 at 5872.014 kb on + strand, within AO356_25975 at 5872.015 kb on - strand, within AO356_25975 at 5872.189 kb on - strand, within AO356_25975 at 5872.290 kb on + strand at 5872.291 kb on - strand at 5872.291 kb on - strand at 5872.291 kb on - strand at 5872.453 kb on + strand at 5872.514 kb on + strand at 5872.517 kb on - strand at 5872.517 kb on - strand at 5872.575 kb on + strand at 5872.719 kb on + strand at 5872.775 kb on + strand at 5872.775 kb on + strand at 5872.952 kb on + strand, within AO356_25980 at 5872.952 kb on + strand, within AO356_25980 at 5872.952 kb on + strand, within AO356_25980 at 5872.953 kb on - strand, within AO356_25980 at 5872.956 kb on + strand, within AO356_25980 at 5872.956 kb on + strand, within AO356_25980 at 5872.957 kb on - strand, within AO356_25980 at 5873.178 kb on - strand, within AO356_25980 at 5873.376 kb on + strand, within AO356_25980 at 5873.741 kb on + strand at 5873.742 kb on - strand at 5873.742 kb on - strand at 5873.742 kb on - strand at 5873.754 kb on - strand at 5873.756 kb on + strand at 5873.756 kb on + strand at 5873.756 kb on + strand at 5873.757 kb on - strand at 5873.757 kb on - strand at 5873.757 kb on - strand at 5873.757 kb on - strand at 5873.764 kb on - strand at 5873.970 kb on + strand at 5874.109 kb on + strand at 5874.267 kb on + strand, within AO356_25985 at 5874.268 kb on - strand, within AO356_25985 at 5874.322 kb on - strand, within AO356_25985 at 5874.322 kb on - strand, within AO356_25985 at 5874.463 kb on - strand, within AO356_25985 at 5874.471 kb on + strand, within AO356_25985 at 5874.491 kb on + strand, within AO356_25985
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,871,729 + AO356_25975 0.56 +0.5 5,871,729 + AO356_25975 0.56 -1.3 5,871,729 + AO356_25975 0.56 +1.0 5,871,730 - AO356_25975 0.56 +0.8 5,871,730 - AO356_25975 0.56 +1.6 5,871,730 - AO356_25975 0.56 +0.8 5,871,889 - AO356_25975 0.66 +0.0 5,872,014 + AO356_25975 0.73 +0.8 5,872,014 + AO356_25975 0.73 +2.4 5,872,015 - AO356_25975 0.73 +1.1 5,872,189 - AO356_25975 0.84 -1.3 5,872,290 + +0.0 5,872,291 - +1.2 5,872,291 - +0.4 5,872,291 - -0.3 5,872,453 + +0.0 5,872,514 + -0.2 5,872,517 - +0.8 5,872,517 - -0.9 5,872,575 + -0.4 5,872,719 + -0.8 5,872,775 + +0.0 5,872,775 + +1.9 5,872,952 + AO356_25980 0.29 -0.2 5,872,952 + AO356_25980 0.29 -0.8 5,872,952 + AO356_25980 0.29 -0.5 5,872,953 - AO356_25980 0.29 +0.0 5,872,956 + AO356_25980 0.29 -0.7 5,872,956 + AO356_25980 0.29 +0.0 5,872,957 - AO356_25980 0.29 +0.2 5,873,178 - AO356_25980 0.53 +0.4 5,873,376 + AO356_25980 0.75 -0.5 5,873,741 + +1.5 5,873,742 - +0.4 5,873,742 - +0.6 5,873,742 - +0.4 5,873,754 - -0.7 5,873,756 + -1.4 5,873,756 + +0.0 5,873,756 + -0.1 5,873,757 - +0.0 5,873,757 - +0.5 5,873,757 - -0.2 5,873,757 - -0.1 5,873,764 - -1.2 5,873,970 + -0.1 5,874,109 + +0.9 5,874,267 + AO356_25985 0.15 -0.1 5,874,268 - AO356_25985 0.15 +0.3 5,874,322 - AO356_25985 0.17 -1.1 5,874,322 - AO356_25985 0.17 +0.6 5,874,463 - AO356_25985 0.23 +0.9 5,874,471 + AO356_25985 0.23 -1.4 5,874,491 + AO356_25985 0.24 -1.3
Or see this region's nucleotide sequence