Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25960 and AO356_25965 are separated by 41 nucleotides AO356_25965 and AO356_25970 are separated by 133 nucleotides
AO356_25960: AO356_25960 - hypothetical protein, at 5,867,951 to 5,869,300
_25960
AO356_25965: AO356_25965 - AsnC family transcriptional regulator, at 5,869,342 to 5,869,779
_25965
AO356_25970: AO356_25970 - multidrug DMT transporter permease, at 5,869,913 to 5,870,806
_25970
Position (kb)
5869
5870 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5868.373 kb on + strand, within AO356_25960 at 5868.373 kb on + strand, within AO356_25960 at 5868.398 kb on + strand, within AO356_25960 at 5868.398 kb on + strand, within AO356_25960 at 5868.399 kb on - strand, within AO356_25960 at 5868.413 kb on + strand, within AO356_25960 at 5868.413 kb on + strand, within AO356_25960 at 5868.413 kb on + strand, within AO356_25960 at 5868.413 kb on + strand, within AO356_25960 at 5868.414 kb on - strand, within AO356_25960 at 5868.414 kb on - strand, within AO356_25960 at 5868.414 kb on - strand, within AO356_25960 at 5868.414 kb on - strand, within AO356_25960 at 5868.414 kb on - strand, within AO356_25960 at 5868.414 kb on - strand, within AO356_25960 at 5868.421 kb on + strand, within AO356_25960 at 5868.423 kb on + strand, within AO356_25960 at 5868.423 kb on + strand, within AO356_25960 at 5868.424 kb on - strand, within AO356_25960 at 5868.424 kb on - strand, within AO356_25960 at 5868.424 kb on - strand, within AO356_25960 at 5868.431 kb on + strand, within AO356_25960 at 5868.432 kb on - strand, within AO356_25960 at 5868.432 kb on - strand, within AO356_25960 at 5868.481 kb on + strand, within AO356_25960 at 5868.481 kb on + strand, within AO356_25960 at 5868.482 kb on - strand, within AO356_25960 at 5868.543 kb on + strand, within AO356_25960 at 5868.543 kb on + strand, within AO356_25960 at 5868.544 kb on - strand, within AO356_25960 at 5868.544 kb on - strand, within AO356_25960 at 5868.544 kb on - strand, within AO356_25960 at 5868.544 kb on - strand, within AO356_25960 at 5868.634 kb on + strand, within AO356_25960 at 5868.635 kb on - strand, within AO356_25960 at 5868.716 kb on + strand, within AO356_25960 at 5868.796 kb on - strand, within AO356_25960 at 5868.796 kb on - strand, within AO356_25960 at 5868.811 kb on + strand, within AO356_25960 at 5868.811 kb on + strand, within AO356_25960 at 5868.811 kb on + strand, within AO356_25960 at 5868.812 kb on - strand, within AO356_25960 at 5869.112 kb on + strand, within AO356_25960 at 5869.149 kb on - strand, within AO356_25960 at 5869.178 kb on + strand at 5869.179 kb on - strand at 5869.298 kb on + strand at 5869.882 kb on + strand at 5869.882 kb on + strand at 5869.883 kb on - strand at 5869.883 kb on - strand at 5870.166 kb on + strand, within AO356_25970 at 5870.166 kb on + strand, within AO356_25970 at 5870.166 kb on + strand, within AO356_25970 at 5870.166 kb on + strand, within AO356_25970 at 5870.167 kb on - strand, within AO356_25970 at 5870.167 kb on - strand, within AO356_25970 at 5870.177 kb on + strand, within AO356_25970 at 5870.177 kb on + strand, within AO356_25970 at 5870.178 kb on - strand, within AO356_25970 at 5870.178 kb on - strand, within AO356_25970 at 5870.213 kb on + strand, within AO356_25970 at 5870.214 kb on - strand, within AO356_25970 at 5870.214 kb on - strand, within AO356_25970 at 5870.214 kb on - strand, within AO356_25970 at 5870.238 kb on + strand, within AO356_25970 at 5870.238 kb on + strand, within AO356_25970 at 5870.591 kb on + strand, within AO356_25970 at 5870.591 kb on + strand, within AO356_25970 at 5870.591 kb on + strand, within AO356_25970 at 5870.592 kb on - strand, within AO356_25970 at 5870.592 kb on - strand, within AO356_25970
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,868,373 + AO356_25960 0.31 -0.5 5,868,373 + AO356_25960 0.31 -0.4 5,868,398 + AO356_25960 0.33 +0.8 5,868,398 + AO356_25960 0.33 +0.7 5,868,399 - AO356_25960 0.33 -0.7 5,868,413 + AO356_25960 0.34 +0.0 5,868,413 + AO356_25960 0.34 +0.6 5,868,413 + AO356_25960 0.34 -0.3 5,868,413 + AO356_25960 0.34 -0.1 5,868,414 - AO356_25960 0.34 +0.0 5,868,414 - AO356_25960 0.34 -0.2 5,868,414 - AO356_25960 0.34 +0.7 5,868,414 - AO356_25960 0.34 +0.3 5,868,414 - AO356_25960 0.34 +0.5 5,868,414 - AO356_25960 0.34 +0.4 5,868,421 + AO356_25960 0.35 -1.5 5,868,423 + AO356_25960 0.35 -1.5 5,868,423 + AO356_25960 0.35 +2.0 5,868,424 - AO356_25960 0.35 +0.5 5,868,424 - AO356_25960 0.35 -3.1 5,868,424 - AO356_25960 0.35 -0.4 5,868,431 + AO356_25960 0.36 +0.5 5,868,432 - AO356_25960 0.36 -0.4 5,868,432 - AO356_25960 0.36 +0.2 5,868,481 + AO356_25960 0.39 +1.0 5,868,481 + AO356_25960 0.39 -1.1 5,868,482 - AO356_25960 0.39 +0.0 5,868,543 + AO356_25960 0.44 +1.9 5,868,543 + AO356_25960 0.44 +1.0 5,868,544 - AO356_25960 0.44 +0.4 5,868,544 - AO356_25960 0.44 +0.2 5,868,544 - AO356_25960 0.44 +0.3 5,868,544 - AO356_25960 0.44 +1.0 5,868,634 + AO356_25960 0.51 -0.7 5,868,635 - AO356_25960 0.51 -2.1 5,868,716 + AO356_25960 0.57 +0.8 5,868,796 - AO356_25960 0.63 +1.0 5,868,796 - AO356_25960 0.63 -0.1 5,868,811 + AO356_25960 0.64 +0.0 5,868,811 + AO356_25960 0.64 +1.5 5,868,811 + AO356_25960 0.64 +0.6 5,868,812 - AO356_25960 0.64 -0.3 5,869,112 + AO356_25960 0.86 +0.9 5,869,149 - AO356_25960 0.89 -1.1 5,869,178 + +0.5 5,869,179 - -0.3 5,869,298 + -1.5 5,869,882 + +0.5 5,869,882 + -1.1 5,869,883 - -1.0 5,869,883 - -0.4 5,870,166 + AO356_25970 0.28 -0.1 5,870,166 + AO356_25970 0.28 -1.3 5,870,166 + AO356_25970 0.28 +0.0 5,870,166 + AO356_25970 0.28 +1.3 5,870,167 - AO356_25970 0.28 +0.0 5,870,167 - AO356_25970 0.28 +0.7 5,870,177 + AO356_25970 0.30 +0.0 5,870,177 + AO356_25970 0.30 -0.5 5,870,178 - AO356_25970 0.30 -0.3 5,870,178 - AO356_25970 0.30 +1.3 5,870,213 + AO356_25970 0.34 -0.7 5,870,214 - AO356_25970 0.34 +0.8 5,870,214 - AO356_25970 0.34 +0.0 5,870,214 - AO356_25970 0.34 -0.4 5,870,238 + AO356_25970 0.36 -0.1 5,870,238 + AO356_25970 0.36 -0.3 5,870,591 + AO356_25970 0.76 +0.6 5,870,591 + AO356_25970 0.76 +0.6 5,870,591 + AO356_25970 0.76 -0.1 5,870,592 - AO356_25970 0.76 +0.6 5,870,592 - AO356_25970 0.76 +0.0
Or see this region's nucleotide sequence