Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25695 and AO356_25700 are separated by 69 nucleotides AO356_25700 and AO356_25705 are separated by 253 nucleotides
AO356_25695: AO356_25695 - ligand-gated channel, at 5,811,611 to 5,813,734
_25695
AO356_25700: AO356_25700 - hypothetical protein, at 5,813,804 to 5,814,799
_25700
AO356_25705: AO356_25705 - monooxygenase, at 5,815,053 to 5,816,096
_25705
Position (kb)
5813
5814
5815 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5812.881 kb on - strand, within AO356_25695 at 5813.039 kb on - strand, within AO356_25695 at 5813.039 kb on - strand, within AO356_25695 at 5813.073 kb on - strand, within AO356_25695 at 5813.143 kb on + strand, within AO356_25695 at 5813.143 kb on + strand, within AO356_25695 at 5813.144 kb on - strand, within AO356_25695 at 5813.144 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.166 kb on - strand, within AO356_25695 at 5813.188 kb on + strand, within AO356_25695 at 5813.188 kb on + strand, within AO356_25695 at 5813.226 kb on + strand, within AO356_25695 at 5813.227 kb on - strand, within AO356_25695 at 5813.242 kb on - strand, within AO356_25695 at 5813.348 kb on + strand, within AO356_25695 at 5813.349 kb on - strand, within AO356_25695 at 5813.349 kb on - strand, within AO356_25695 at 5813.354 kb on + strand, within AO356_25695 at 5813.370 kb on + strand, within AO356_25695 at 5813.371 kb on - strand, within AO356_25695 at 5813.371 kb on - strand, within AO356_25695 at 5813.371 kb on - strand, within AO356_25695 at 5813.501 kb on + strand, within AO356_25695 at 5813.553 kb on - strand at 5813.553 kb on - strand at 5813.553 kb on - strand at 5813.648 kb on + strand at 5813.732 kb on + strand at 5813.841 kb on + strand at 5813.845 kb on + strand at 5813.845 kb on + strand at 5813.898 kb on + strand at 5813.899 kb on - strand at 5813.901 kb on + strand at 5813.902 kb on - strand at 5813.931 kb on - strand, within AO356_25700 at 5813.962 kb on - strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5814.025 kb on - strand, within AO356_25700 at 5814.237 kb on + strand, within AO356_25700 at 5814.237 kb on + strand, within AO356_25700 at 5814.237 kb on + strand, within AO356_25700 at 5814.238 kb on - strand, within AO356_25700 at 5814.288 kb on + strand, within AO356_25700 at 5814.288 kb on + strand, within AO356_25700 at 5814.288 kb on + strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.367 kb on + strand, within AO356_25700 at 5814.367 kb on + strand, within AO356_25700 at 5814.369 kb on + strand, within AO356_25700 at 5814.396 kb on + strand, within AO356_25700 at 5814.465 kb on + strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.621 kb on + strand, within AO356_25700 at 5814.622 kb on - strand, within AO356_25700 at 5814.622 kb on - strand, within AO356_25700 at 5814.651 kb on + strand, within AO356_25700 at 5814.751 kb on + strand at 5814.752 kb on - strand at 5814.812 kb on + strand at 5814.930 kb on + strand at 5814.931 kb on - strand at 5814.931 kb on - strand at 5814.931 kb on - strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.987 kb on - strand at 5814.987 kb on - strand at 5815.082 kb on + strand at 5815.168 kb on + strand, within AO356_25705 at 5815.521 kb on + strand, within AO356_25705 at 5815.522 kb on - strand, within AO356_25705
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,812,881 - AO356_25695 0.60 -0.6 5,813,039 - AO356_25695 0.67 -1.1 5,813,039 - AO356_25695 0.67 -2.9 5,813,073 - AO356_25695 0.69 +0.1 5,813,143 + AO356_25695 0.72 -0.6 5,813,143 + AO356_25695 0.72 -0.8 5,813,144 - AO356_25695 0.72 -0.4 5,813,144 - AO356_25695 0.72 -0.6 5,813,148 - AO356_25695 0.72 +0.6 5,813,148 - AO356_25695 0.72 -0.3 5,813,148 - AO356_25695 0.72 -0.4 5,813,148 - AO356_25695 0.72 +0.4 5,813,166 - AO356_25695 0.73 -0.3 5,813,188 + AO356_25695 0.74 +0.5 5,813,188 + AO356_25695 0.74 -0.8 5,813,226 + AO356_25695 0.76 +0.3 5,813,227 - AO356_25695 0.76 +0.6 5,813,242 - AO356_25695 0.77 +1.2 5,813,348 + AO356_25695 0.82 -0.2 5,813,349 - AO356_25695 0.82 -1.7 5,813,349 - AO356_25695 0.82 -0.4 5,813,354 + AO356_25695 0.82 -0.7 5,813,370 + AO356_25695 0.83 -0.5 5,813,371 - AO356_25695 0.83 -0.8 5,813,371 - AO356_25695 0.83 -0.4 5,813,371 - AO356_25695 0.83 +0.3 5,813,501 + AO356_25695 0.89 -0.9 5,813,553 - -0.7 5,813,553 - -0.9 5,813,553 - +0.8 5,813,648 + +0.1 5,813,732 + +0.4 5,813,841 + -0.7 5,813,845 + -0.1 5,813,845 + +0.9 5,813,898 + +0.4 5,813,899 - -1.3 5,813,901 + +0.4 5,813,902 - -0.4 5,813,931 - AO356_25700 0.13 -1.5 5,813,962 - AO356_25700 0.16 -0.0 5,813,991 + AO356_25700 0.19 +0.8 5,813,991 + AO356_25700 0.19 -0.2 5,813,991 + AO356_25700 0.19 -0.1 5,813,991 + AO356_25700 0.19 -1.6 5,813,991 + AO356_25700 0.19 +1.3 5,813,991 + AO356_25700 0.19 -1.5 5,813,991 + AO356_25700 0.19 -0.2 5,813,992 - AO356_25700 0.19 +0.3 5,813,992 - AO356_25700 0.19 -0.5 5,813,992 - AO356_25700 0.19 -0.5 5,813,992 - AO356_25700 0.19 -1.0 5,814,025 - AO356_25700 0.22 -1.3 5,814,237 + AO356_25700 0.43 +0.1 5,814,237 + AO356_25700 0.43 -0.4 5,814,237 + AO356_25700 0.43 -0.7 5,814,238 - AO356_25700 0.44 -0.1 5,814,288 + AO356_25700 0.49 +0.7 5,814,288 + AO356_25700 0.49 +0.1 5,814,288 + AO356_25700 0.49 -0.1 5,814,289 - AO356_25700 0.49 +0.6 5,814,289 - AO356_25700 0.49 -0.4 5,814,289 - AO356_25700 0.49 +0.3 5,814,289 - AO356_25700 0.49 -1.4 5,814,289 - AO356_25700 0.49 +0.1 5,814,289 - AO356_25700 0.49 +1.4 5,814,367 + AO356_25700 0.57 +0.5 5,814,367 + AO356_25700 0.57 -0.3 5,814,369 + AO356_25700 0.57 +0.3 5,814,396 + AO356_25700 0.59 -0.9 5,814,465 + AO356_25700 0.66 +2.1 5,814,466 - AO356_25700 0.66 -0.8 5,814,466 - AO356_25700 0.66 -0.1 5,814,466 - AO356_25700 0.66 +0.6 5,814,466 - AO356_25700 0.66 +0.6 5,814,621 + AO356_25700 0.82 +0.6 5,814,622 - AO356_25700 0.82 -0.4 5,814,622 - AO356_25700 0.82 +0.8 5,814,651 + AO356_25700 0.85 -0.9 5,814,751 + -0.7 5,814,752 - +0.4 5,814,812 + -1.3 5,814,930 + -0.2 5,814,931 - +0.8 5,814,931 - +1.5 5,814,931 - +0.6 5,814,986 + -0.2 5,814,986 + +0.3 5,814,986 + +0.8 5,814,986 + -0.6 5,814,986 + -0.7 5,814,986 + -0.5 5,814,987 - +0.1 5,814,987 - +0.1 5,815,082 + +0.5 5,815,168 + AO356_25705 0.11 +0.4 5,815,521 + AO356_25705 0.45 -0.8 5,815,522 - AO356_25705 0.45 -0.5
Or see this region's nucleotide sequence