Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23460

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23455 and AO356_23460 are separated by 154 nucleotidesAO356_23460 and AO356_23465 are separated by 56 nucleotidesAO356_23465 and AO356_23470 are separated by 58 nucleotides AO356_23455: AO356_23455 - diguanylate cyclase, at 5,257,486 to 5,259,132 _23455 AO356_23460: AO356_23460 - porin, at 5,259,287 to 5,259,985 _23460 AO356_23465: AO356_23465 - polyketide cyclase, at 5,260,042 to 5,260,512 _23465 AO356_23470: AO356_23470 - polyketide synthase, at 5,260,571 to 5,263,981 _23470 Position (kb) 5259 5260Strain fitness (log2 ratio) -2 -1 0 1 2at 5258.375 kb on + strand, within AO356_23455at 5258.376 kb on - strand, within AO356_23455at 5258.376 kb on - strand, within AO356_23455at 5258.382 kb on + strand, within AO356_23455at 5258.834 kb on + strand, within AO356_23455at 5258.834 kb on + strand, within AO356_23455at 5258.834 kb on + strand, within AO356_23455at 5258.835 kb on - strand, within AO356_23455at 5258.854 kb on - strand, within AO356_23455at 5258.982 kb on - strandat 5258.982 kb on - strandat 5258.987 kb on + strandat 5258.987 kb on + strandat 5258.987 kb on + strandat 5258.988 kb on - strandat 5258.988 kb on - strandat 5258.988 kb on - strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.134 kb on + strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.135 kb on - strandat 5259.176 kb on - strandat 5259.289 kb on - strandat 5259.331 kb on - strandat 5259.405 kb on + strand, within AO356_23460at 5259.406 kb on - strand, within AO356_23460at 5259.442 kb on - strand, within AO356_23460at 5259.442 kb on - strand, within AO356_23460at 5259.543 kb on + strand, within AO356_23460at 5259.565 kb on - strand, within AO356_23460at 5259.565 kb on - strand, within AO356_23460at 5259.565 kb on - strand, within AO356_23460at 5259.609 kb on + strand, within AO356_23460at 5259.609 kb on + strand, within AO356_23460at 5259.678 kb on + strand, within AO356_23460at 5259.888 kb on + strand, within AO356_23460at 5259.889 kb on - strand, within AO356_23460at 5259.977 kb on + strandat 5259.989 kb on - strandat 5260.014 kb on + strandat 5260.015 kb on - strandat 5260.045 kb on + strandat 5260.046 kb on - strandat 5260.175 kb on + strand, within AO356_23465at 5260.656 kb on + strandat 5260.656 kb on + strandat 5260.656 kb on + strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.657 kb on - strandat 5260.824 kb on + strandat 5260.824 kb on + strandat 5260.824 kb on + strandat 5260.825 kb on - strandat 5260.825 kb on - strandat 5260.825 kb on - strandat 5260.864 kb on - strandat 5260.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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5,258,375 + AO356_23455 0.54 -0.3
5,258,376 - AO356_23455 0.54 -0.9
5,258,376 - AO356_23455 0.54 -1.2
5,258,382 + AO356_23455 0.54 +1.1
5,258,834 + AO356_23455 0.82 +0.7
5,258,834 + AO356_23455 0.82 +0.2
5,258,834 + AO356_23455 0.82 +0.4
5,258,835 - AO356_23455 0.82 -0.3
5,258,854 - AO356_23455 0.83 +1.1
5,258,982 - +0.2
5,258,982 - -0.7
5,258,987 + -0.5
5,258,987 + +0.2
5,258,987 + +0.8
5,258,988 - -0.8
5,258,988 - +0.9
5,258,988 - +2.1
5,259,134 + -1.7
5,259,134 + +0.2
5,259,134 + +0.5
5,259,134 + +0.8
5,259,134 + +0.3
5,259,134 + +0.1
5,259,134 + -1.2
5,259,134 + -0.5
5,259,134 + -0.2
5,259,135 - -1.2
5,259,135 - -0.4
5,259,135 - +0.8
5,259,135 - +0.1
5,259,135 - -0.8
5,259,135 - +0.4
5,259,135 - -1.5
5,259,135 - -0.5
5,259,135 - +0.2
5,259,135 - +0.4
5,259,135 - -0.9
5,259,135 - +0.1
5,259,176 - +0.5
5,259,289 - -0.8
5,259,331 - +0.2
5,259,405 + AO356_23460 0.17 +0.9
5,259,406 - AO356_23460 0.17 +0.8
5,259,442 - AO356_23460 0.22 -0.3
5,259,442 - AO356_23460 0.22 -0.7
5,259,543 + AO356_23460 0.37 -0.4
5,259,565 - AO356_23460 0.40 +1.0
5,259,565 - AO356_23460 0.40 -0.9
5,259,565 - AO356_23460 0.40 -0.7
5,259,609 + AO356_23460 0.46 -0.7
5,259,609 + AO356_23460 0.46 +1.7
5,259,678 + AO356_23460 0.56 +0.4
5,259,888 + AO356_23460 0.86 +0.5
5,259,889 - AO356_23460 0.86 +0.7
5,259,977 + +0.5
5,259,989 - -1.2
5,260,014 + -1.3
5,260,015 - -0.0
5,260,045 + -0.2
5,260,046 - +0.1
5,260,175 + AO356_23465 0.28 -1.9
5,260,656 + +0.4
5,260,656 + -0.2
5,260,656 + +1.1
5,260,657 - -1.5
5,260,657 - +0.7
5,260,657 - +0.3
5,260,657 - -1.1
5,260,657 - -1.3
5,260,824 + +0.3
5,260,824 + -1.2
5,260,824 + -0.9
5,260,825 - -0.2
5,260,825 - -0.2
5,260,825 - -0.7
5,260,864 - +0.1
5,260,864 - +0.3

Or see this region's nucleotide sequence