Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22480 and AO356_22485 are separated by 63 nucleotides AO356_22485 and AO356_22490 are separated by 86 nucleotides AO356_22490 and AO356_22495 are separated by 181 nucleotides AO356_22495 and AO356_22500 overlap by 4 nucleotides
AO356_22480: AO356_22480 - oxidoreductase, at 5,023,651 to 5,025,216
_22480
AO356_22485: AO356_22485 - hypothetical protein, at 5,025,280 to 5,026,053
_22485
AO356_22490: AO356_22490 - phosphohydrolase, at 5,026,140 to 5,027,579
_22490
AO356_22495: AO356_22495 - RNA polymerase subunit sigma-24, at 5,027,761 to 5,028,267
_22495
AO356_22500: AO356_22500 - hypothetical protein, at 5,028,264 to 5,029,190
_22500
Position (kb)
5026
5027
5028 Strain fitness (log2 ratio)
-2
-1
0
1 at 5025.191 kb on + strand at 5025.192 kb on - strand at 5025.192 kb on - strand at 5025.310 kb on + strand at 5025.311 kb on - strand at 5025.602 kb on + strand, within AO356_22485 at 5025.603 kb on - strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.970 kb on - strand, within AO356_22485 at 5025.970 kb on - strand, within AO356_22485 at 5025.970 kb on - strand, within AO356_22485 at 5026.118 kb on + strand at 5026.146 kb on - strand at 5026.557 kb on + strand, within AO356_22490 at 5026.557 kb on + strand, within AO356_22490 at 5026.558 kb on - strand, within AO356_22490 at 5026.855 kb on + strand, within AO356_22490 at 5026.855 kb on + strand, within AO356_22490 at 5026.856 kb on - strand, within AO356_22490 at 5026.856 kb on - strand, within AO356_22490 at 5026.925 kb on - strand, within AO356_22490 at 5026.969 kb on - strand, within AO356_22490 at 5026.969 kb on - strand, within AO356_22490 at 5027.028 kb on + strand, within AO356_22490 at 5027.029 kb on - strand, within AO356_22490 at 5027.029 kb on - strand, within AO356_22490 at 5027.029 kb on - strand, within AO356_22490 at 5027.030 kb on + strand, within AO356_22490 at 5027.030 kb on + strand, within AO356_22490 at 5027.031 kb on - strand, within AO356_22490 at 5027.031 kb on - strand, within AO356_22490 at 5027.061 kb on + strand, within AO356_22490 at 5027.155 kb on - strand, within AO356_22490 at 5027.389 kb on + strand, within AO356_22490 at 5027.506 kb on + strand at 5027.506 kb on + strand at 5027.506 kb on + strand at 5027.506 kb on + strand at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.018 kb on - strand, within AO356_22495 at 5028.018 kb on - strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.433 kb on + strand, within AO356_22500 at 5028.433 kb on + strand, within AO356_22500 at 5028.434 kb on - strand, within AO356_22500 at 5028.434 kb on - strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.562 kb on - strand, within AO356_22500 at 5028.562 kb on - strand, within AO356_22500
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,025,191 + -1.7 5,025,192 - -0.2 5,025,192 - -0.9 5,025,310 + +0.1 5,025,311 - -1.3 5,025,602 + AO356_22485 0.42 +0.5 5,025,603 - AO356_22485 0.42 +0.4 5,025,969 + AO356_22485 0.89 -0.9 5,025,969 + AO356_22485 0.89 -0.2 5,025,969 + AO356_22485 0.89 -0.7 5,025,969 + AO356_22485 0.89 -1.3 5,025,970 - AO356_22485 0.89 -2.2 5,025,970 - AO356_22485 0.89 +0.3 5,025,970 - AO356_22485 0.89 +0.7 5,026,118 + -1.3 5,026,146 - -1.7 5,026,557 + AO356_22490 0.29 +0.1 5,026,557 + AO356_22490 0.29 -0.2 5,026,558 - AO356_22490 0.29 -0.3 5,026,855 + AO356_22490 0.50 +1.3 5,026,855 + AO356_22490 0.50 +0.7 5,026,856 - AO356_22490 0.50 +0.6 5,026,856 - AO356_22490 0.50 +0.4 5,026,925 - AO356_22490 0.55 +0.6 5,026,969 - AO356_22490 0.58 -0.2 5,026,969 - AO356_22490 0.58 -0.1 5,027,028 + AO356_22490 0.62 +0.4 5,027,029 - AO356_22490 0.62 +0.4 5,027,029 - AO356_22490 0.62 -0.4 5,027,029 - AO356_22490 0.62 -1.5 5,027,030 + AO356_22490 0.62 -2.5 5,027,030 + AO356_22490 0.62 -0.5 5,027,031 - AO356_22490 0.62 +0.5 5,027,031 - AO356_22490 0.62 -1.9 5,027,061 + AO356_22490 0.64 +0.1 5,027,155 - AO356_22490 0.70 +0.7 5,027,389 + AO356_22490 0.87 +0.2 5,027,506 + +0.8 5,027,506 + -0.9 5,027,506 + -0.3 5,027,506 + +0.5 5,028,017 + AO356_22495 0.50 +0.0 5,028,017 + AO356_22495 0.50 -0.3 5,028,017 + AO356_22495 0.50 -0.3 5,028,017 + AO356_22495 0.50 -0.1 5,028,017 + AO356_22495 0.50 +0.9 5,028,018 - AO356_22495 0.51 -0.4 5,028,018 - AO356_22495 0.51 -0.2 5,028,214 + AO356_22495 0.89 -0.3 5,028,214 + AO356_22495 0.89 -0.8 5,028,214 + +1.7 5,028,214 + AO356_22495 0.89 -0.7 5,028,214 + AO356_22495 0.89 -0.1 5,028,214 + AO356_22495 0.89 -0.3 5,028,214 + AO356_22495 0.89 +0.1 5,028,214 + AO356_22495 0.89 -1.6 5,028,214 + AO356_22495 0.89 +0.3 5,028,214 + AO356_22495 0.89 +0.1 5,028,215 - AO356_22495 0.90 +0.5 5,028,215 - AO356_22495 0.90 +0.6 5,028,215 - AO356_22495 0.90 -0.5 5,028,215 - AO356_22495 0.90 -0.3 5,028,215 - AO356_22495 0.90 -1.0 5,028,215 - AO356_22495 0.90 +0.2 5,028,215 - AO356_22495 0.90 +0.3 5,028,433 + AO356_22500 0.18 -0.5 5,028,433 + AO356_22500 0.18 +0.5 5,028,434 - AO356_22500 0.18 +0.7 5,028,434 - AO356_22500 0.18 +0.1 5,028,561 + AO356_22500 0.32 +0.1 5,028,561 + AO356_22500 0.32 +0.9 5,028,561 + AO356_22500 0.32 -0.7 5,028,561 + AO356_22500 0.32 -0.6 5,028,561 + AO356_22500 0.32 -1.2 5,028,561 + AO356_22500 0.32 -0.0 5,028,562 - AO356_22500 0.32 -0.6 5,028,562 - AO356_22500 0.32 +1.4
Or see this region's nucleotide sequence