Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22490

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22480 and AO356_22485 are separated by 63 nucleotidesAO356_22485 and AO356_22490 are separated by 86 nucleotidesAO356_22490 and AO356_22495 are separated by 181 nucleotidesAO356_22495 and AO356_22500 overlap by 4 nucleotides AO356_22480: AO356_22480 - oxidoreductase, at 5,023,651 to 5,025,216 _22480 AO356_22485: AO356_22485 - hypothetical protein, at 5,025,280 to 5,026,053 _22485 AO356_22490: AO356_22490 - phosphohydrolase, at 5,026,140 to 5,027,579 _22490 AO356_22495: AO356_22495 - RNA polymerase subunit sigma-24, at 5,027,761 to 5,028,267 _22495 AO356_22500: AO356_22500 - hypothetical protein, at 5,028,264 to 5,029,190 _22500 Position (kb) 5026 5027 5028Strain fitness (log2 ratio) -2 -1 0 1at 5025.191 kb on + strandat 5025.192 kb on - strandat 5025.192 kb on - strandat 5025.310 kb on + strandat 5025.311 kb on - strandat 5025.602 kb on + strand, within AO356_22485at 5025.603 kb on - strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.969 kb on + strand, within AO356_22485at 5025.970 kb on - strand, within AO356_22485at 5025.970 kb on - strand, within AO356_22485at 5025.970 kb on - strand, within AO356_22485at 5026.118 kb on + strandat 5026.146 kb on - strandat 5026.557 kb on + strand, within AO356_22490at 5026.557 kb on + strand, within AO356_22490at 5026.558 kb on - strand, within AO356_22490at 5026.855 kb on + strand, within AO356_22490at 5026.855 kb on + strand, within AO356_22490at 5026.856 kb on - strand, within AO356_22490at 5026.856 kb on - strand, within AO356_22490at 5026.925 kb on - strand, within AO356_22490at 5026.969 kb on - strand, within AO356_22490at 5026.969 kb on - strand, within AO356_22490at 5027.028 kb on + strand, within AO356_22490at 5027.029 kb on - strand, within AO356_22490at 5027.029 kb on - strand, within AO356_22490at 5027.029 kb on - strand, within AO356_22490at 5027.030 kb on + strand, within AO356_22490at 5027.030 kb on + strand, within AO356_22490at 5027.031 kb on - strand, within AO356_22490at 5027.031 kb on - strand, within AO356_22490at 5027.061 kb on + strand, within AO356_22490at 5027.155 kb on - strand, within AO356_22490at 5027.389 kb on + strand, within AO356_22490at 5027.506 kb on + strandat 5027.506 kb on + strandat 5027.506 kb on + strandat 5027.506 kb on + strandat 5028.017 kb on + strand, within AO356_22495at 5028.017 kb on + strand, within AO356_22495at 5028.017 kb on + strand, within AO356_22495at 5028.017 kb on + strand, within AO356_22495at 5028.017 kb on + strand, within AO356_22495at 5028.018 kb on - strand, within AO356_22495at 5028.018 kb on - strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strandat 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.214 kb on + strand, within AO356_22495at 5028.215 kb on - strand, within AO356_22495at 5028.215 kb on - strand, within AO356_22495at 5028.215 kb on - strand, within AO356_22495at 5028.215 kb on - strand, within AO356_22495at 5028.215 kb on - strand, within AO356_22495at 5028.215 kb on - strand, within AO356_22495at 5028.215 kb on - strand, within AO356_22495at 5028.433 kb on + strand, within AO356_22500at 5028.433 kb on + strand, within AO356_22500at 5028.434 kb on - strand, within AO356_22500at 5028.434 kb on - strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.561 kb on + strand, within AO356_22500at 5028.562 kb on - strand, within AO356_22500at 5028.562 kb on - strand, within AO356_22500

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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5,025,191 + -1.7
5,025,192 - -0.2
5,025,192 - -0.9
5,025,310 + +0.1
5,025,311 - -1.3
5,025,602 + AO356_22485 0.42 +0.5
5,025,603 - AO356_22485 0.42 +0.4
5,025,969 + AO356_22485 0.89 -0.9
5,025,969 + AO356_22485 0.89 -0.2
5,025,969 + AO356_22485 0.89 -0.7
5,025,969 + AO356_22485 0.89 -1.3
5,025,970 - AO356_22485 0.89 -2.2
5,025,970 - AO356_22485 0.89 +0.3
5,025,970 - AO356_22485 0.89 +0.7
5,026,118 + -1.3
5,026,146 - -1.7
5,026,557 + AO356_22490 0.29 +0.1
5,026,557 + AO356_22490 0.29 -0.2
5,026,558 - AO356_22490 0.29 -0.3
5,026,855 + AO356_22490 0.50 +1.3
5,026,855 + AO356_22490 0.50 +0.7
5,026,856 - AO356_22490 0.50 +0.6
5,026,856 - AO356_22490 0.50 +0.4
5,026,925 - AO356_22490 0.55 +0.6
5,026,969 - AO356_22490 0.58 -0.2
5,026,969 - AO356_22490 0.58 -0.1
5,027,028 + AO356_22490 0.62 +0.4
5,027,029 - AO356_22490 0.62 +0.4
5,027,029 - AO356_22490 0.62 -0.4
5,027,029 - AO356_22490 0.62 -1.5
5,027,030 + AO356_22490 0.62 -2.5
5,027,030 + AO356_22490 0.62 -0.5
5,027,031 - AO356_22490 0.62 +0.5
5,027,031 - AO356_22490 0.62 -1.9
5,027,061 + AO356_22490 0.64 +0.1
5,027,155 - AO356_22490 0.70 +0.7
5,027,389 + AO356_22490 0.87 +0.2
5,027,506 + +0.8
5,027,506 + -0.9
5,027,506 + -0.3
5,027,506 + +0.5
5,028,017 + AO356_22495 0.50 +0.0
5,028,017 + AO356_22495 0.50 -0.3
5,028,017 + AO356_22495 0.50 -0.3
5,028,017 + AO356_22495 0.50 -0.1
5,028,017 + AO356_22495 0.50 +0.9
5,028,018 - AO356_22495 0.51 -0.4
5,028,018 - AO356_22495 0.51 -0.2
5,028,214 + AO356_22495 0.89 -0.3
5,028,214 + AO356_22495 0.89 -0.8
5,028,214 + +1.7
5,028,214 + AO356_22495 0.89 -0.7
5,028,214 + AO356_22495 0.89 -0.1
5,028,214 + AO356_22495 0.89 -0.3
5,028,214 + AO356_22495 0.89 +0.1
5,028,214 + AO356_22495 0.89 -1.6
5,028,214 + AO356_22495 0.89 +0.3
5,028,214 + AO356_22495 0.89 +0.1
5,028,215 - AO356_22495 0.90 +0.5
5,028,215 - AO356_22495 0.90 +0.6
5,028,215 - AO356_22495 0.90 -0.5
5,028,215 - AO356_22495 0.90 -0.3
5,028,215 - AO356_22495 0.90 -1.0
5,028,215 - AO356_22495 0.90 +0.2
5,028,215 - AO356_22495 0.90 +0.3
5,028,433 + AO356_22500 0.18 -0.5
5,028,433 + AO356_22500 0.18 +0.5
5,028,434 - AO356_22500 0.18 +0.7
5,028,434 - AO356_22500 0.18 +0.1
5,028,561 + AO356_22500 0.32 +0.1
5,028,561 + AO356_22500 0.32 +0.9
5,028,561 + AO356_22500 0.32 -0.7
5,028,561 + AO356_22500 0.32 -0.6
5,028,561 + AO356_22500 0.32 -1.2
5,028,561 + AO356_22500 0.32 -0.0
5,028,562 - AO356_22500 0.32 -0.6
5,028,562 - AO356_22500 0.32 +1.4

Or see this region's nucleotide sequence