Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21570 and AO356_21575 are separated by 219 nucleotides AO356_21575 and AO356_21580 are separated by 204 nucleotides AO356_21580 and AO356_21585 overlap by 4 nucleotides AO356_21585 and AO356_21590 are separated by 53 nucleotides AO356_21590 and AO356_21595 are separated by 232 nucleotides
AO356_21570: AO356_21570 - hypothetical protein, at 4,830,884 to 4,831,312
_21570
AO356_21575: AO356_21575 - GTP pyrophosphokinase, at 4,831,532 to 4,831,960
_21575
AO356_21580: AO356_21580 - branched-chain amino acid ABC transporter permease, at 4,832,165 to 4,832,875
_21580
AO356_21585: AO356_21585 - branched-chain amino acid transporter, at 4,832,872 to 4,833,180
_21585
AO356_21590: AO356_21590 - hypothetical protein, at 4,833,234 to 4,833,440
_21590
AO356_21595: AO356_21595 - MFS transporter, at 4,833,673 to 4,834,884
_21595
Position (kb)
4832
4833 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4831.209 kb on + strand, within AO356_21570 at 4831.233 kb on + strand, within AO356_21570 at 4831.233 kb on + strand, within AO356_21570 at 4831.234 kb on - strand, within AO356_21570 at 4831.234 kb on - strand, within AO356_21570 at 4831.234 kb on - strand, within AO356_21570 at 4831.234 kb on - strand, within AO356_21570 at 4831.276 kb on - strand at 4831.292 kb on + strand at 4831.293 kb on - strand at 4831.338 kb on + strand at 4831.338 kb on + strand at 4831.339 kb on - strand at 4831.339 kb on - strand at 4831.431 kb on + strand at 4831.431 kb on + strand at 4831.431 kb on + strand at 4831.432 kb on - strand at 4831.445 kb on - strand at 4831.515 kb on + strand at 4831.516 kb on - strand at 4831.533 kb on + strand at 4831.533 kb on + strand at 4831.534 kb on - strand at 4831.534 kb on - strand at 4831.534 kb on - strand at 4831.534 kb on - strand at 4831.534 kb on - strand at 4831.554 kb on + strand at 4831.613 kb on + strand, within AO356_21575 at 4831.623 kb on - strand, within AO356_21575 at 4831.704 kb on + strand, within AO356_21575 at 4831.704 kb on + strand, within AO356_21575 at 4831.705 kb on - strand, within AO356_21575 at 4831.705 kb on - strand, within AO356_21575 at 4831.705 kb on - strand, within AO356_21575 at 4831.831 kb on + strand, within AO356_21575 at 4831.963 kb on + strand at 4831.963 kb on + strand at 4831.964 kb on - strand at 4831.971 kb on + strand at 4831.971 kb on + strand at 4831.971 kb on + strand at 4831.972 kb on - strand at 4831.972 kb on - strand at 4831.972 kb on - strand at 4832.048 kb on - strand at 4832.053 kb on + strand at 4832.053 kb on + strand at 4832.054 kb on - strand at 4832.054 kb on - strand at 4832.056 kb on + strand at 4832.056 kb on + strand at 4832.056 kb on + strand at 4832.056 kb on + strand at 4832.057 kb on - strand at 4832.080 kb on + strand at 4832.081 kb on - strand at 4832.121 kb on + strand at 4832.122 kb on - strand at 4832.122 kb on - strand at 4832.122 kb on - strand at 4832.134 kb on + strand at 4832.134 kb on + strand at 4832.134 kb on + strand at 4832.134 kb on + strand at 4832.135 kb on - strand at 4832.135 kb on - strand at 4832.197 kb on - strand at 4832.213 kb on + strand at 4832.213 kb on + strand at 4832.260 kb on - strand, within AO356_21580 at 4832.260 kb on - strand, within AO356_21580 at 4832.308 kb on + strand, within AO356_21580 at 4832.308 kb on + strand, within AO356_21580 at 4832.308 kb on + strand, within AO356_21580 at 4832.309 kb on - strand, within AO356_21580 at 4832.460 kb on - strand, within AO356_21580 at 4832.495 kb on + strand, within AO356_21580 at 4832.580 kb on + strand, within AO356_21580 at 4832.786 kb on + strand, within AO356_21580 at 4832.787 kb on - strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.793 kb on - strand, within AO356_21580 at 4832.793 kb on - strand, within AO356_21580 at 4832.912 kb on + strand, within AO356_21585 at 4832.986 kb on + strand, within AO356_21585 at 4833.038 kb on + strand, within AO356_21585 at 4833.038 kb on + strand, within AO356_21585 at 4833.039 kb on - strand, within AO356_21585 at 4833.149 kb on + strand, within AO356_21585 at 4833.149 kb on + strand, within AO356_21585 at 4833.149 kb on + strand, within AO356_21585 at 4833.150 kb on - strand at 4833.150 kb on - strand at 4833.390 kb on + strand, within AO356_21590 at 4833.391 kb on - strand, within AO356_21590 at 4833.391 kb on - strand, within AO356_21590 at 4833.443 kb on + strand at 4833.443 kb on + strand at 4833.443 kb on + strand at 4833.443 kb on + strand at 4833.444 kb on - strand at 4833.495 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.647 kb on + strand at 4833.648 kb on - strand at 4833.648 kb on - strand at 4833.650 kb on + strand at 4833.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 4,831,209 + AO356_21570 0.76 -0.4 4,831,233 + AO356_21570 0.81 -1.2 4,831,233 + AO356_21570 0.81 +0.7 4,831,234 - AO356_21570 0.82 -0.1 4,831,234 - AO356_21570 0.82 -0.2 4,831,234 - AO356_21570 0.82 +0.6 4,831,234 - AO356_21570 0.82 +0.5 4,831,276 - +0.1 4,831,292 + -0.5 4,831,293 - +0.1 4,831,338 + +1.0 4,831,338 + +0.1 4,831,339 - -0.3 4,831,339 - +1.0 4,831,431 + +1.1 4,831,431 + +0.6 4,831,431 + +0.4 4,831,432 - +1.0 4,831,445 - +0.7 4,831,515 + -0.2 4,831,516 - -1.2 4,831,533 + +0.3 4,831,533 + -0.4 4,831,534 - -1.0 4,831,534 - +0.2 4,831,534 - -0.7 4,831,534 - -1.3 4,831,534 - +0.5 4,831,554 + +0.7 4,831,613 + AO356_21575 0.19 -0.7 4,831,623 - AO356_21575 0.21 -2.3 4,831,704 + AO356_21575 0.40 -0.1 4,831,704 + AO356_21575 0.40 -0.5 4,831,705 - AO356_21575 0.40 -0.3 4,831,705 - AO356_21575 0.40 -0.2 4,831,705 - AO356_21575 0.40 +0.7 4,831,831 + AO356_21575 0.70 -0.4 4,831,963 + -0.1 4,831,963 + +0.5 4,831,964 - -0.5 4,831,971 + +0.1 4,831,971 + +0.7 4,831,971 + +0.7 4,831,972 - -0.2 4,831,972 - -1.2 4,831,972 - -1.9 4,832,048 - -0.3 4,832,053 + -0.5 4,832,053 + +0.1 4,832,054 - -0.0 4,832,054 - -0.6 4,832,056 + -0.3 4,832,056 + +1.3 4,832,056 + +1.9 4,832,056 + -0.1 4,832,057 - +0.3 4,832,080 + -0.5 4,832,081 - -0.7 4,832,121 + -0.9 4,832,122 - +0.9 4,832,122 - -1.7 4,832,122 - +0.5 4,832,134 + +0.8 4,832,134 + +0.4 4,832,134 + -0.1 4,832,134 + -1.3 4,832,135 - -0.2 4,832,135 - -0.0 4,832,197 - -0.2 4,832,213 + +0.6 4,832,213 + -0.9 4,832,260 - AO356_21580 0.13 +0.2 4,832,260 - AO356_21580 0.13 -0.9 4,832,308 + AO356_21580 0.20 -0.9 4,832,308 + AO356_21580 0.20 +0.7 4,832,308 + AO356_21580 0.20 +0.1 4,832,309 - AO356_21580 0.20 -0.0 4,832,460 - AO356_21580 0.41 +0.3 4,832,495 + AO356_21580 0.46 -0.7 4,832,580 + AO356_21580 0.58 -0.9 4,832,786 + AO356_21580 0.87 +0.0 4,832,787 - AO356_21580 0.87 +1.1 4,832,792 + AO356_21580 0.88 +0.3 4,832,792 + AO356_21580 0.88 -0.2 4,832,792 + AO356_21580 0.88 +0.1 4,832,792 + AO356_21580 0.88 -0.1 4,832,792 + AO356_21580 0.88 -0.3 4,832,793 - AO356_21580 0.88 -0.9 4,832,793 - AO356_21580 0.88 -1.9 4,832,912 + AO356_21585 0.13 +0.4 4,832,986 + AO356_21585 0.37 -0.3 4,833,038 + AO356_21585 0.54 +0.6 4,833,038 + AO356_21585 0.54 +0.1 4,833,039 - AO356_21585 0.54 -1.2 4,833,149 + AO356_21585 0.90 +0.1 4,833,149 + AO356_21585 0.90 -0.8 4,833,149 + AO356_21585 0.90 +0.9 4,833,150 - +0.4 4,833,150 - +0.1 4,833,390 + AO356_21590 0.75 +1.1 4,833,391 - AO356_21590 0.76 +0.6 4,833,391 - AO356_21590 0.76 +0.5 4,833,443 + -0.5 4,833,443 + +0.3 4,833,443 + -0.3 4,833,443 + +0.4 4,833,444 - +0.4 4,833,495 + -0.3 4,833,636 + -1.0 4,833,636 + +0.1 4,833,636 + +0.1 4,833,636 + +1.3 4,833,636 + +0.4 4,833,637 - +2.1 4,833,637 - -1.5 4,833,637 - -0.7 4,833,637 - +1.3 4,833,637 - -0.0 4,833,637 - -0.1 4,833,637 - -0.1 4,833,647 + +0.5 4,833,648 - -0.9 4,833,648 - +1.2 4,833,650 + +0.0 4,833,651 - +0.3
Or see this region's nucleotide sequence