Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18435

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18425 and AO356_18430 are separated by 4 nucleotidesAO356_18430 and AO356_18435 are separated by 2 nucleotidesAO356_18435 and AO356_18440 are separated by 221 nucleotides AO356_18425: AO356_18425 - SAM-dependent methyltransferase, at 4,147,457 to 4,148,125 _18425 AO356_18430: AO356_18430 - InaA protein, at 4,148,130 to 4,148,840 _18430 AO356_18435: AO356_18435 - hypothetical protein, at 4,148,843 to 4,149,070 _18435 AO356_18440: AO356_18440 - acriflavine resistance protein B, at 4,149,292 to 4,152,318 _18440 Position (kb) 4148 4149 4150Strain fitness (log2 ratio) -2 -1 0 1 2at 4147.991 kb on + strand, within AO356_18425at 4148.020 kb on + strand, within AO356_18425at 4148.020 kb on + strand, within AO356_18425at 4148.020 kb on + strand, within AO356_18425at 4148.020 kb on + strand, within AO356_18425at 4148.021 kb on - strand, within AO356_18425at 4148.021 kb on - strand, within AO356_18425at 4148.021 kb on - strand, within AO356_18425at 4148.021 kb on - strand, within AO356_18425at 4148.021 kb on - strand, within AO356_18425at 4148.021 kb on - strand, within AO356_18425at 4148.025 kb on + strand, within AO356_18425at 4148.025 kb on + strand, within AO356_18425at 4148.026 kb on - strand, within AO356_18425at 4148.088 kb on - strandat 4148.088 kb on - strandat 4148.088 kb on - strandat 4148.088 kb on - strandat 4148.088 kb on - strandat 4148.088 kb on - strandat 4148.105 kb on + strandat 4148.105 kb on + strandat 4148.105 kb on + strandat 4148.105 kb on + strandat 4148.106 kb on - strandat 4148.106 kb on - strandat 4148.106 kb on - strandat 4148.106 kb on - strandat 4148.106 kb on - strandat 4148.109 kb on + strandat 4148.109 kb on + strandat 4148.109 kb on + strandat 4148.110 kb on - strandat 4148.110 kb on - strandat 4148.112 kb on + strandat 4148.113 kb on - strandat 4148.113 kb on - strandat 4148.113 kb on - strandat 4148.113 kb on - strandat 4148.123 kb on + strandat 4148.123 kb on + strandat 4148.124 kb on - strandat 4148.124 kb on - strandat 4148.124 kb on - strandat 4148.124 kb on - strandat 4148.124 kb on - strandat 4148.283 kb on + strand, within AO356_18430at 4148.311 kb on - strand, within AO356_18430at 4148.325 kb on + strand, within AO356_18430at 4148.326 kb on - strand, within AO356_18430at 4148.458 kb on + strand, within AO356_18430at 4148.503 kb on - strand, within AO356_18430at 4148.503 kb on - strand, within AO356_18430at 4148.503 kb on - strand, within AO356_18430at 4148.503 kb on - strand, within AO356_18430at 4148.616 kb on + strand, within AO356_18430at 4148.616 kb on + strand, within AO356_18430at 4148.616 kb on + strand, within AO356_18430at 4148.616 kb on + strand, within AO356_18430at 4148.617 kb on - strand, within AO356_18430at 4148.617 kb on - strand, within AO356_18430at 4148.617 kb on - strand, within AO356_18430at 4148.802 kb on + strandat 4148.836 kb on + strandat 4148.837 kb on - strandat 4148.839 kb on - strandat 4148.839 kb on - strandat 4148.913 kb on + strand, within AO356_18435at 4148.913 kb on + strand, within AO356_18435at 4148.914 kb on - strand, within AO356_18435at 4149.140 kb on + strandat 4149.140 kb on + strandat 4149.140 kb on + strandat 4149.140 kb on + strandat 4149.141 kb on - strandat 4149.141 kb on - strandat 4149.141 kb on - strandat 4149.204 kb on + strandat 4149.268 kb on + strandat 4149.324 kb on - strandat 4149.324 kb on - strandat 4149.324 kb on - strandat 4149.324 kb on - strandat 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.623 kb on + strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.624 kb on - strand, within AO356_18440at 4149.750 kb on + strand, within AO356_18440at 4149.750 kb on + strand, within AO356_18440at 4149.751 kb on - strand, within AO356_18440at 4149.751 kb on - strand, within AO356_18440at 4149.800 kb on - strand, within AO356_18440at 4150.028 kb on + strand, within AO356_18440at 4150.028 kb on + strand, within AO356_18440at 4150.028 kb on + strand, within AO356_18440at 4150.028 kb on + strand, within AO356_18440at 4150.028 kb on + strand, within AO356_18440at 4150.029 kb on - strand, within AO356_18440at 4150.029 kb on - strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.031 kb on + strand, within AO356_18440at 4150.032 kb on - strand, within AO356_18440at 4150.032 kb on - strand, within AO356_18440

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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4,147,991 + AO356_18425 0.80 -0.8
4,148,020 + AO356_18425 0.84 -1.8
4,148,020 + AO356_18425 0.84 -1.9
4,148,020 + AO356_18425 0.84 -1.2
4,148,020 + AO356_18425 0.84 -1.1
4,148,021 - AO356_18425 0.84 -0.2
4,148,021 - AO356_18425 0.84 -0.1
4,148,021 - AO356_18425 0.84 +0.6
4,148,021 - AO356_18425 0.84 -0.4
4,148,021 - AO356_18425 0.84 +1.0
4,148,021 - AO356_18425 0.84 +0.4
4,148,025 + AO356_18425 0.85 +0.5
4,148,025 + AO356_18425 0.85 -1.8
4,148,026 - AO356_18425 0.85 +0.4
4,148,088 - +1.6
4,148,088 - +0.2
4,148,088 - +0.9
4,148,088 - +0.6
4,148,088 - -0.2
4,148,088 - -0.3
4,148,105 + -0.7
4,148,105 + +0.1
4,148,105 + +1.2
4,148,105 + -0.8
4,148,106 - -0.2
4,148,106 - +0.2
4,148,106 - -0.5
4,148,106 - +0.6
4,148,106 - +0.2
4,148,109 + -0.0
4,148,109 + +1.2
4,148,109 + +0.5
4,148,110 - +1.1
4,148,110 - -0.2
4,148,112 + +1.5
4,148,113 - +0.4
4,148,113 - +0.8
4,148,113 - +0.4
4,148,113 - +1.0
4,148,123 + +1.0
4,148,123 + +1.0
4,148,124 - -1.0
4,148,124 - +1.8
4,148,124 - +0.7
4,148,124 - +0.0
4,148,124 - +0.2
4,148,283 + AO356_18430 0.22 -1.5
4,148,311 - AO356_18430 0.25 -0.1
4,148,325 + AO356_18430 0.27 +1.0
4,148,326 - AO356_18430 0.28 +0.7
4,148,458 + AO356_18430 0.46 +0.9
4,148,503 - AO356_18430 0.52 +0.7
4,148,503 - AO356_18430 0.52 +0.0
4,148,503 - AO356_18430 0.52 +0.4
4,148,503 - AO356_18430 0.52 +1.4
4,148,616 + AO356_18430 0.68 +1.2
4,148,616 + AO356_18430 0.68 +0.2
4,148,616 + AO356_18430 0.68 +0.6
4,148,616 + AO356_18430 0.68 +0.6
4,148,617 - AO356_18430 0.68 +0.1
4,148,617 - AO356_18430 0.68 +1.3
4,148,617 - AO356_18430 0.68 +0.2
4,148,802 + +0.2
4,148,836 + -0.9
4,148,837 - +0.8
4,148,839 - +0.2
4,148,839 - -0.4
4,148,913 + AO356_18435 0.31 -0.2
4,148,913 + AO356_18435 0.31 -0.6
4,148,914 - AO356_18435 0.31 -0.4
4,149,140 + +0.4
4,149,140 + +0.2
4,149,140 + -0.5
4,149,140 + -1.6
4,149,141 - +0.0
4,149,141 - +0.2
4,149,141 - +0.4
4,149,204 + +0.3
4,149,268 + +0.5
4,149,324 - -0.0
4,149,324 - +0.2
4,149,324 - +0.6
4,149,324 - +0.4
4,149,623 + AO356_18440 0.11 -0.4
4,149,623 + AO356_18440 0.11 +0.0
4,149,623 + AO356_18440 0.11 -0.2
4,149,623 + AO356_18440 0.11 -0.6
4,149,623 + AO356_18440 0.11 -1.0
4,149,623 + AO356_18440 0.11 -0.0
4,149,623 + AO356_18440 0.11 +0.8
4,149,623 + AO356_18440 0.11 +1.2
4,149,623 + AO356_18440 0.11 -0.1
4,149,623 + AO356_18440 0.11 +0.0
4,149,623 + AO356_18440 0.11 -0.1
4,149,624 - AO356_18440 0.11 +0.4
4,149,624 - AO356_18440 0.11 -0.5
4,149,624 - AO356_18440 0.11 +0.0
4,149,624 - AO356_18440 0.11 -0.9
4,149,624 - AO356_18440 0.11 -0.4
4,149,624 - AO356_18440 0.11 +0.2
4,149,624 - AO356_18440 0.11 -0.7
4,149,624 - AO356_18440 0.11 -1.1
4,149,624 - AO356_18440 0.11 +0.5
4,149,624 - AO356_18440 0.11 -1.5
4,149,624 - AO356_18440 0.11 +1.2
4,149,624 - AO356_18440 0.11 +0.4
4,149,624 - AO356_18440 0.11 -1.0
4,149,624 - AO356_18440 0.11 +1.2
4,149,750 + AO356_18440 0.15 +0.9
4,149,750 + AO356_18440 0.15 +1.0
4,149,751 - AO356_18440 0.15 -0.4
4,149,751 - AO356_18440 0.15 +1.2
4,149,800 - AO356_18440 0.17 +1.6
4,150,028 + AO356_18440 0.24 -0.9
4,150,028 + AO356_18440 0.24 +2.0
4,150,028 + AO356_18440 0.24 -0.6
4,150,028 + AO356_18440 0.24 -0.1
4,150,028 + AO356_18440 0.24 -1.9
4,150,029 - AO356_18440 0.24 +0.1
4,150,029 - AO356_18440 0.24 -0.1
4,150,031 + AO356_18440 0.24 -0.3
4,150,031 + AO356_18440 0.24 +0.8
4,150,031 + AO356_18440 0.24 -0.4
4,150,031 + AO356_18440 0.24 +0.2
4,150,031 + AO356_18440 0.24 -0.9
4,150,031 + AO356_18440 0.24 +0.6
4,150,031 + AO356_18440 0.24 -1.0
4,150,031 + AO356_18440 0.24 +0.4
4,150,031 + AO356_18440 0.24 +0.7
4,150,032 - AO356_18440 0.24 +0.9
4,150,032 - AO356_18440 0.24 -0.6

Or see this region's nucleotide sequence