Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18335 and AO356_18340 are separated by 54 nucleotides AO356_18340 and AO356_18345 are separated by 107 nucleotides AO356_18345 and AO356_18350 overlap by 4 nucleotides AO356_18350 and AO356_18355 overlap by 8 nucleotides AO356_18355 and AO356_18360 overlap by 4 nucleotides
AO356_18335: AO356_18335 - LuxR family transcriptional regulator, at 4,130,657 to 4,131,283
_18335
AO356_18340: AO356_18340 - leucyl-tRNA synthetase, at 4,131,338 to 4,131,523
_18340
AO356_18345: AO356_18345 - endonuclease III, at 4,131,631 to 4,132,269
_18345
AO356_18350: AO356_18350 - NADH:quinone oxidoreductase, at 4,132,266 to 4,132,799
_18350
AO356_18355: AO356_18355 - electron transporter RnfG, at 4,132,792 to 4,133,400
_18355
AO356_18360: AO356_18360 - electron transporter RnfD, at 4,133,397 to 4,134,377
_18360
Position (kb)
4132
4133 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4131.268 kb on + strand at 4131.269 kb on - strand at 4131.299 kb on + strand at 4131.299 kb on + strand at 4131.300 kb on - strand at 4131.300 kb on - strand at 4131.306 kb on + strand at 4131.306 kb on + strand at 4131.307 kb on - strand at 4131.332 kb on + strand at 4131.332 kb on + strand at 4131.332 kb on + strand at 4131.332 kb on + strand at 4131.332 kb on + strand at 4131.332 kb on + strand at 4131.332 kb on + strand at 4131.333 kb on - strand at 4131.333 kb on - strand at 4131.354 kb on + strand at 4131.354 kb on + strand at 4131.354 kb on + strand at 4131.375 kb on - strand, within AO356_18340 at 4131.434 kb on + strand, within AO356_18340 at 4131.494 kb on + strand, within AO356_18340 at 4131.494 kb on + strand, within AO356_18340 at 4131.494 kb on + strand, within AO356_18340 at 4131.494 kb on + strand, within AO356_18340 at 4131.494 kb on + strand, within AO356_18340 at 4131.494 kb on + strand, within AO356_18340 at 4131.495 kb on - strand, within AO356_18340 at 4131.495 kb on - strand, within AO356_18340 at 4131.541 kb on - strand at 4131.541 kb on - strand at 4131.562 kb on + strand at 4131.562 kb on + strand at 4131.562 kb on + strand at 4131.562 kb on + strand at 4131.562 kb on + strand at 4131.562 kb on + strand at 4131.563 kb on - strand at 4131.563 kb on - strand at 4131.563 kb on - strand at 4131.563 kb on - strand at 4131.564 kb on + strand at 4131.564 kb on + strand at 4131.564 kb on + strand at 4131.565 kb on - strand at 4131.565 kb on - strand at 4131.608 kb on - strand at 4131.624 kb on + strand at 4131.656 kb on + strand at 4131.656 kb on + strand at 4131.656 kb on + strand at 4131.656 kb on + strand at 4131.657 kb on - strand at 4131.657 kb on - strand at 4131.657 kb on - strand at 4131.665 kb on - strand at 4131.717 kb on - strand, within AO356_18345 at 4131.717 kb on - strand, within AO356_18345 at 4131.717 kb on - strand, within AO356_18345 at 4131.758 kb on + strand, within AO356_18345 at 4131.759 kb on - strand, within AO356_18345 at 4131.759 kb on - strand, within AO356_18345 at 4131.759 kb on - strand, within AO356_18345 at 4131.759 kb on - strand, within AO356_18345 at 4131.829 kb on - strand, within AO356_18345 at 4132.047 kb on - strand, within AO356_18345 at 4132.047 kb on - strand, within AO356_18345 at 4132.076 kb on + strand, within AO356_18345 at 4132.076 kb on + strand, within AO356_18345 at 4132.077 kb on - strand, within AO356_18345 at 4132.077 kb on - strand, within AO356_18345 at 4132.113 kb on + strand, within AO356_18345 at 4132.193 kb on + strand, within AO356_18345 at 4132.193 kb on + strand, within AO356_18345 at 4132.194 kb on - strand, within AO356_18345 at 4132.194 kb on - strand, within AO356_18345 at 4132.243 kb on + strand at 4132.243 kb on + strand at 4132.244 kb on - strand at 4132.335 kb on + strand, within AO356_18350 at 4132.335 kb on + strand, within AO356_18350 at 4132.535 kb on - strand, within AO356_18350 at 4132.535 kb on - strand, within AO356_18350 at 4132.552 kb on + strand, within AO356_18350 at 4132.587 kb on + strand, within AO356_18350 at 4132.587 kb on + strand, within AO356_18350 at 4132.587 kb on + strand, within AO356_18350 at 4132.587 kb on + strand, within AO356_18350 at 4132.587 kb on + strand, within AO356_18350 at 4132.588 kb on - strand, within AO356_18350 at 4132.588 kb on - strand, within AO356_18350 at 4132.588 kb on - strand, within AO356_18350 at 4132.588 kb on - strand, within AO356_18350 at 4132.713 kb on + strand, within AO356_18350 at 4132.713 kb on + strand, within AO356_18350 at 4132.714 kb on - strand, within AO356_18350 at 4132.793 kb on + strand at 4132.793 kb on + strand at 4132.793 kb on + strand at 4132.838 kb on + strand at 4132.839 kb on - strand at 4132.839 kb on - strand at 4133.187 kb on + strand, within AO356_18355 at 4133.187 kb on + strand, within AO356_18355 at 4133.188 kb on - strand, within AO356_18355 at 4133.188 kb on - strand, within AO356_18355 at 4133.188 kb on - strand, within AO356_18355 at 4133.188 kb on - strand, within AO356_18355 at 4133.188 kb on - strand, within AO356_18355 at 4133.243 kb on + strand, within AO356_18355 at 4133.243 kb on + strand, within AO356_18355 at 4133.336 kb on + strand, within AO356_18355 at 4133.336 kb on + strand, within AO356_18355 at 4133.336 kb on + strand, within AO356_18355 at 4133.337 kb on - strand, within AO356_18355 at 4133.337 kb on - strand, within AO356_18355 at 4133.337 kb on - strand, within AO356_18355 at 4133.696 kb on + strand, within AO356_18360 at 4133.697 kb on - strand, within AO356_18360
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 4,131,268 + +0.4 4,131,269 - +1.1 4,131,299 + -0.8 4,131,299 + +0.5 4,131,300 - -0.4 4,131,300 - -0.0 4,131,306 + +1.8 4,131,306 + -0.1 4,131,307 - +0.5 4,131,332 + -0.3 4,131,332 + -0.2 4,131,332 + -0.7 4,131,332 + +0.8 4,131,332 + -0.8 4,131,332 + -0.6 4,131,332 + +0.7 4,131,333 - -0.6 4,131,333 - -0.6 4,131,354 + +0.4 4,131,354 + -0.4 4,131,354 + -0.9 4,131,375 - AO356_18340 0.20 -0.4 4,131,434 + AO356_18340 0.52 -0.6 4,131,494 + AO356_18340 0.84 +0.0 4,131,494 + AO356_18340 0.84 +0.7 4,131,494 + AO356_18340 0.84 -1.3 4,131,494 + AO356_18340 0.84 -0.4 4,131,494 + AO356_18340 0.84 +0.2 4,131,494 + AO356_18340 0.84 -0.8 4,131,495 - AO356_18340 0.84 +0.1 4,131,495 - AO356_18340 0.84 -0.0 4,131,541 - -0.4 4,131,541 - +1.0 4,131,562 + -0.8 4,131,562 + -0.3 4,131,562 + -0.7 4,131,562 + -1.3 4,131,562 + +0.2 4,131,562 + +0.8 4,131,563 - -0.4 4,131,563 - -1.4 4,131,563 - +1.5 4,131,563 - -0.1 4,131,564 + -0.8 4,131,564 + +0.2 4,131,564 + +1.5 4,131,565 - +0.1 4,131,565 - +1.2 4,131,608 - -1.2 4,131,624 + +0.0 4,131,656 + +0.2 4,131,656 + -0.2 4,131,656 + -1.8 4,131,656 + +0.5 4,131,657 - -0.4 4,131,657 - -0.0 4,131,657 - -0.8 4,131,665 - -0.2 4,131,717 - AO356_18345 0.13 +0.2 4,131,717 - AO356_18345 0.13 -0.0 4,131,717 - AO356_18345 0.13 +0.6 4,131,758 + AO356_18345 0.20 +0.2 4,131,759 - AO356_18345 0.20 -0.3 4,131,759 - AO356_18345 0.20 -0.4 4,131,759 - AO356_18345 0.20 +0.9 4,131,759 - AO356_18345 0.20 +0.0 4,131,829 - AO356_18345 0.31 -1.1 4,132,047 - AO356_18345 0.65 -1.8 4,132,047 - AO356_18345 0.65 +0.1 4,132,076 + AO356_18345 0.70 -0.0 4,132,076 + AO356_18345 0.70 +0.9 4,132,077 - AO356_18345 0.70 -0.6 4,132,077 - AO356_18345 0.70 +0.1 4,132,113 + AO356_18345 0.75 -0.4 4,132,193 + AO356_18345 0.88 +0.0 4,132,193 + AO356_18345 0.88 +0.5 4,132,194 - AO356_18345 0.88 -0.5 4,132,194 - AO356_18345 0.88 -1.1 4,132,243 + +1.8 4,132,243 + +1.1 4,132,244 - +0.2 4,132,335 + AO356_18350 0.13 +0.4 4,132,335 + AO356_18350 0.13 -0.2 4,132,535 - AO356_18350 0.50 +0.4 4,132,535 - AO356_18350 0.50 +1.1 4,132,552 + AO356_18350 0.54 +1.3 4,132,587 + AO356_18350 0.60 -0.4 4,132,587 + AO356_18350 0.60 +0.2 4,132,587 + AO356_18350 0.60 +0.4 4,132,587 + AO356_18350 0.60 +1.1 4,132,587 + AO356_18350 0.60 +0.7 4,132,588 - AO356_18350 0.60 +1.5 4,132,588 - AO356_18350 0.60 +0.6 4,132,588 - AO356_18350 0.60 +0.8 4,132,588 - AO356_18350 0.60 +1.8 4,132,713 + AO356_18350 0.84 +1.8 4,132,713 + AO356_18350 0.84 -0.2 4,132,714 - AO356_18350 0.84 +0.1 4,132,793 + +0.1 4,132,793 + -1.8 4,132,793 + -1.0 4,132,838 + +0.1 4,132,839 - +1.4 4,132,839 - +1.2 4,133,187 + AO356_18355 0.65 +0.0 4,133,187 + AO356_18355 0.65 -0.8 4,133,188 - AO356_18355 0.65 -0.3 4,133,188 - AO356_18355 0.65 +0.7 4,133,188 - AO356_18355 0.65 -0.2 4,133,188 - AO356_18355 0.65 -0.2 4,133,188 - AO356_18355 0.65 +1.0 4,133,243 + AO356_18355 0.74 -0.9 4,133,243 + AO356_18355 0.74 +0.1 4,133,336 + AO356_18355 0.89 +0.1 4,133,336 + AO356_18355 0.89 +0.0 4,133,336 + AO356_18355 0.89 -1.2 4,133,337 - AO356_18355 0.89 +0.5 4,133,337 - AO356_18355 0.89 -0.0 4,133,337 - AO356_18355 0.89 -0.6 4,133,696 + AO356_18360 0.30 +0.0 4,133,697 - AO356_18360 0.31 -0.5
Or see this region's nucleotide sequence