Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_13390 and AO356_13395 overlap by 4 nucleotides AO356_13395 and AO356_13400 overlap by 4 nucleotides AO356_13400 and AO356_13405 are separated by 25 nucleotides
AO356_13390: AO356_13390 - coproporphyrinogen III oxidase, at 3,039,298 to 3,040,497
_13390
AO356_13395: AO356_13395 - non-canonical purine NTP pyrophosphatase, at 3,040,494 to 3,041,090
_13395
AO356_13400: AO356_13400 - homoserine acetyltransferase, at 3,041,087 to 3,041,521
_13400
AO356_13405: AO356_13405 - methionine biosynthesis protein MetW, at 3,041,547 to 3,042,167
_13405
Position (kb)
3040
3041
3042 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3039.569 kb on + strand, within AO356_13390 at 3039.569 kb on + strand, within AO356_13390 at 3039.569 kb on + strand, within AO356_13390 at 3039.569 kb on + strand, within AO356_13390 at 3039.570 kb on - strand, within AO356_13390 at 3039.570 kb on - strand, within AO356_13390 at 3039.677 kb on + strand, within AO356_13390 at 3039.677 kb on + strand, within AO356_13390 at 3039.678 kb on - strand, within AO356_13390 at 3039.678 kb on - strand, within AO356_13390 at 3039.678 kb on - strand, within AO356_13390 at 3039.687 kb on + strand, within AO356_13390 at 3039.687 kb on + strand, within AO356_13390 at 3039.687 kb on + strand, within AO356_13390 at 3039.688 kb on - strand, within AO356_13390 at 3039.731 kb on + strand, within AO356_13390 at 3039.731 kb on + strand, within AO356_13390 at 3040.017 kb on + strand, within AO356_13390 at 3040.017 kb on + strand, within AO356_13390 at 3040.322 kb on + strand, within AO356_13390 at 3040.322 kb on + strand, within AO356_13390 at 3040.322 kb on + strand, within AO356_13390 at 3040.322 kb on + strand, within AO356_13390 at 3040.323 kb on - strand, within AO356_13390 at 3040.323 kb on - strand, within AO356_13390 at 3040.323 kb on - strand, within AO356_13390 at 3040.323 kb on - strand, within AO356_13390 at 3040.323 kb on - strand, within AO356_13390 at 3040.323 kb on - strand, within AO356_13390 at 3040.373 kb on + strand, within AO356_13390 at 3040.374 kb on - strand, within AO356_13390 at 3040.387 kb on + strand at 3040.388 kb on - strand at 3040.409 kb on + strand at 3040.409 kb on + strand at 3040.409 kb on + strand at 3040.409 kb on + strand at 3040.409 kb on + strand at 3040.410 kb on - strand at 3040.410 kb on - strand at 3040.410 kb on - strand at 3040.410 kb on - strand at 3040.834 kb on + strand, within AO356_13395 at 3040.834 kb on + strand, within AO356_13395 at 3040.834 kb on + strand, within AO356_13395 at 3041.202 kb on + strand, within AO356_13400 at 3041.202 kb on + strand, within AO356_13400 at 3041.202 kb on + strand, within AO356_13400 at 3041.202 kb on + strand, within AO356_13400 at 3041.202 kb on + strand, within AO356_13400 at 3041.202 kb on + strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.203 kb on - strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.205 kb on + strand, within AO356_13400 at 3041.206 kb on - strand, within AO356_13400 at 3041.206 kb on - strand, within AO356_13400 at 3041.206 kb on - strand, within AO356_13400 at 3041.206 kb on - strand, within AO356_13400 at 3041.206 kb on - strand, within AO356_13400 at 3041.206 kb on - strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.409 kb on + strand, within AO356_13400 at 3041.410 kb on - strand, within AO356_13400 at 3041.410 kb on - strand, within AO356_13400 at 3041.410 kb on - strand, within AO356_13400 at 3041.422 kb on + strand, within AO356_13400 at 3041.423 kb on - strand, within AO356_13400 at 3041.510 kb on + strand at 3041.510 kb on + strand at 3041.510 kb on + strand at 3041.511 kb on - strand at 3041.548 kb on + strand at 3041.548 kb on + strand at 3041.548 kb on + strand at 3041.548 kb on + strand at 3041.548 kb on + strand at 3041.549 kb on - strand at 3041.549 kb on - strand at 3041.593 kb on + strand at 3041.593 kb on + strand at 3041.594 kb on - strand at 3041.594 kb on - strand at 3041.594 kb on - strand at 3041.594 kb on - strand at 3041.594 kb on - strand at 3041.601 kb on + strand at 3041.601 kb on + strand at 3041.601 kb on + strand at 3041.601 kb on + strand at 3041.602 kb on - strand at 3041.602 kb on - strand at 3041.602 kb on - strand at 3041.602 kb on - strand at 3041.602 kb on - strand at 3041.611 kb on - strand, within AO356_13405 at 3041.618 kb on + strand, within AO356_13405 at 3041.618 kb on + strand, within AO356_13405 at 3041.618 kb on + strand, within AO356_13405 at 3041.619 kb on - strand, within AO356_13405 at 3041.625 kb on + strand, within AO356_13405 at 3041.625 kb on + strand, within AO356_13405 at 3041.625 kb on + strand, within AO356_13405 at 3041.625 kb on + strand, within AO356_13405 at 3041.625 kb on + strand, within AO356_13405 at 3041.625 kb on + strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.626 kb on - strand, within AO356_13405 at 3041.752 kb on + strand, within AO356_13405 at 3041.761 kb on + strand, within AO356_13405 at 3041.761 kb on + strand, within AO356_13405 at 3041.762 kb on - strand, within AO356_13405 at 3041.762 kb on - strand, within AO356_13405 at 3041.806 kb on + strand, within AO356_13405 at 3041.806 kb on + strand, within AO356_13405 at 3041.897 kb on - strand, within AO356_13405
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 3,039,569 + AO356_13390 0.23 -0.1 3,039,569 + AO356_13390 0.23 -0.8 3,039,569 + AO356_13390 0.23 +0.5 3,039,569 + AO356_13390 0.23 +0.5 3,039,570 - AO356_13390 0.23 +0.8 3,039,570 - AO356_13390 0.23 +0.1 3,039,677 + AO356_13390 0.32 +0.8 3,039,677 + AO356_13390 0.32 -0.6 3,039,678 - AO356_13390 0.32 +0.5 3,039,678 - AO356_13390 0.32 +0.5 3,039,678 - AO356_13390 0.32 +0.4 3,039,687 + AO356_13390 0.32 +0.0 3,039,687 + AO356_13390 0.32 -1.4 3,039,687 + AO356_13390 0.32 +1.3 3,039,688 - AO356_13390 0.33 -0.5 3,039,731 + AO356_13390 0.36 -0.0 3,039,731 + AO356_13390 0.36 +0.4 3,040,017 + AO356_13390 0.60 +1.2 3,040,017 + AO356_13390 0.60 -0.1 3,040,322 + AO356_13390 0.85 +0.4 3,040,322 + AO356_13390 0.85 +0.2 3,040,322 + AO356_13390 0.85 +0.7 3,040,322 + AO356_13390 0.85 +1.0 3,040,323 - AO356_13390 0.85 +0.7 3,040,323 - AO356_13390 0.85 +0.6 3,040,323 - AO356_13390 0.85 +0.6 3,040,323 - AO356_13390 0.85 -0.8 3,040,323 - AO356_13390 0.85 +1.0 3,040,323 - AO356_13390 0.85 +1.4 3,040,373 + AO356_13390 0.90 +0.0 3,040,374 - AO356_13390 0.90 +1.0 3,040,387 + +1.4 3,040,388 - -0.9 3,040,409 + +0.8 3,040,409 + -1.6 3,040,409 + -0.6 3,040,409 + -1.5 3,040,409 + +0.0 3,040,410 - +0.0 3,040,410 - +1.1 3,040,410 - +0.2 3,040,410 - +0.2 3,040,834 + AO356_13395 0.57 -0.6 3,040,834 + AO356_13395 0.57 -1.3 3,040,834 + AO356_13395 0.57 -0.3 3,041,202 + AO356_13400 0.26 -0.4 3,041,202 + AO356_13400 0.26 -0.9 3,041,202 + AO356_13400 0.26 -0.9 3,041,202 + AO356_13400 0.26 +0.7 3,041,202 + AO356_13400 0.26 +0.6 3,041,202 + AO356_13400 0.26 +0.3 3,041,203 - AO356_13400 0.27 +0.2 3,041,203 - AO356_13400 0.27 +0.4 3,041,203 - AO356_13400 0.27 +0.3 3,041,203 - AO356_13400 0.27 -0.6 3,041,203 - AO356_13400 0.27 -0.5 3,041,203 - AO356_13400 0.27 +0.3 3,041,203 - AO356_13400 0.27 +1.0 3,041,203 - AO356_13400 0.27 -0.3 3,041,203 - AO356_13400 0.27 +0.0 3,041,205 + AO356_13400 0.27 -0.1 3,041,205 + AO356_13400 0.27 -0.1 3,041,205 + AO356_13400 0.27 -0.2 3,041,205 + AO356_13400 0.27 +1.0 3,041,205 + AO356_13400 0.27 +0.4 3,041,205 + AO356_13400 0.27 -0.2 3,041,205 + AO356_13400 0.27 -0.4 3,041,205 + AO356_13400 0.27 +0.4 3,041,205 + AO356_13400 0.27 -0.7 3,041,205 + AO356_13400 0.27 -0.0 3,041,206 - AO356_13400 0.27 -0.3 3,041,206 - AO356_13400 0.27 +1.7 3,041,206 - AO356_13400 0.27 +0.0 3,041,206 - AO356_13400 0.27 -1.0 3,041,206 - AO356_13400 0.27 -0.4 3,041,206 - AO356_13400 0.27 -0.3 3,041,409 + AO356_13400 0.74 +0.3 3,041,409 + AO356_13400 0.74 -0.8 3,041,409 + AO356_13400 0.74 +1.4 3,041,409 + AO356_13400 0.74 -2.6 3,041,409 + AO356_13400 0.74 -0.5 3,041,409 + AO356_13400 0.74 -0.7 3,041,409 + AO356_13400 0.74 -0.8 3,041,409 + AO356_13400 0.74 -0.0 3,041,409 + AO356_13400 0.74 +0.6 3,041,410 - AO356_13400 0.74 +0.4 3,041,410 - AO356_13400 0.74 -1.5 3,041,410 - AO356_13400 0.74 -0.2 3,041,422 + AO356_13400 0.77 -0.6 3,041,423 - AO356_13400 0.77 +0.3 3,041,510 + +0.7 3,041,510 + +2.7 3,041,510 + -1.6 3,041,511 - -0.1 3,041,548 + +1.4 3,041,548 + +0.1 3,041,548 + -0.6 3,041,548 + +2.4 3,041,548 + +0.3 3,041,549 - -0.1 3,041,549 - +0.9 3,041,593 + +0.9 3,041,593 + -0.1 3,041,594 - -0.1 3,041,594 - +1.1 3,041,594 - -0.1 3,041,594 - -1.9 3,041,594 - +1.3 3,041,601 + +1.0 3,041,601 + -0.6 3,041,601 + -0.4 3,041,601 + +0.7 3,041,602 - -0.6 3,041,602 - -2.1 3,041,602 - -1.2 3,041,602 - -0.2 3,041,602 - +0.7 3,041,611 - AO356_13405 0.10 -0.3 3,041,618 + AO356_13405 0.11 +0.4 3,041,618 + AO356_13405 0.11 +0.1 3,041,618 + AO356_13405 0.11 -0.5 3,041,619 - AO356_13405 0.12 +0.4 3,041,625 + AO356_13405 0.13 +1.4 3,041,625 + AO356_13405 0.13 -0.0 3,041,625 + AO356_13405 0.13 -0.8 3,041,625 + AO356_13405 0.13 +0.8 3,041,625 + AO356_13405 0.13 +0.1 3,041,625 + AO356_13405 0.13 +2.1 3,041,626 - AO356_13405 0.13 -1.3 3,041,626 - AO356_13405 0.13 +0.1 3,041,626 - AO356_13405 0.13 -1.0 3,041,626 - AO356_13405 0.13 -0.4 3,041,626 - AO356_13405 0.13 +0.4 3,041,626 - AO356_13405 0.13 -1.0 3,041,626 - AO356_13405 0.13 -0.4 3,041,626 - AO356_13405 0.13 -0.1 3,041,626 - AO356_13405 0.13 +0.1 3,041,752 + AO356_13405 0.33 -0.2 3,041,761 + AO356_13405 0.34 +0.7 3,041,761 + AO356_13405 0.34 -0.2 3,041,762 - AO356_13405 0.35 +0.4 3,041,762 - AO356_13405 0.35 +0.5 3,041,806 + AO356_13405 0.42 -0.4 3,041,806 + AO356_13405 0.42 -2.2 3,041,897 - AO356_13405 0.56 +0.4
Or see this region's nucleotide sequence