Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06235

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06225 and AO356_06230 are separated by 151 nucleotidesAO356_06230 and AO356_06235 are separated by 101 nucleotidesAO356_06235 and AO356_06240 are separated by 108 nucleotides AO356_06225: AO356_06225 - hypothetical protein, at 1,378,860 to 1,379,414 _06225 AO356_06230: AO356_06230 - TetR family transcriptional regulator, at 1,379,566 to 1,380,282 _06230 AO356_06235: AO356_06235 - lysine--tRNA ligase, at 1,380,384 to 1,381,886 _06235 AO356_06240: AO356_06240 - peptide chain release factor 2, at 1,381,995 to 1,382,876 _06240 Position (kb) 1380 1381 1382Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1379.392 kb on - strandat 1379.567 kb on + strandat 1379.594 kb on + strandat 1379.594 kb on + strandat 1379.594 kb on + strandat 1379.595 kb on - strandat 1379.595 kb on - strandat 1379.595 kb on - strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.616 kb on + strandat 1379.617 kb on - strandat 1379.617 kb on - strandat 1379.617 kb on - strandat 1379.617 kb on - strandat 1379.617 kb on - strandat 1379.617 kb on - strandat 1379.617 kb on - strandat 1379.660 kb on + strand, within AO356_06230at 1379.661 kb on - strand, within AO356_06230at 1379.722 kb on + strand, within AO356_06230at 1379.722 kb on + strand, within AO356_06230at 1379.722 kb on + strand, within AO356_06230at 1379.723 kb on - strand, within AO356_06230at 1379.725 kb on + strand, within AO356_06230at 1379.725 kb on + strand, within AO356_06230at 1379.725 kb on + strand, within AO356_06230at 1379.725 kb on + strand, within AO356_06230at 1379.725 kb on + strand, within AO356_06230at 1379.726 kb on - strand, within AO356_06230at 1379.841 kb on - strand, within AO356_06230at 1379.873 kb on + strand, within AO356_06230at 1379.873 kb on + strand, within AO356_06230at 1379.873 kb on + strand, within AO356_06230at 1379.873 kb on + strand, within AO356_06230at 1379.874 kb on - strand, within AO356_06230at 1379.874 kb on - strand, within AO356_06230at 1379.940 kb on - strand, within AO356_06230at 1379.940 kb on - strand, within AO356_06230at 1380.003 kb on + strand, within AO356_06230at 1380.004 kb on - strand, within AO356_06230at 1380.004 kb on - strand, within AO356_06230at 1380.015 kb on - strand, within AO356_06230at 1380.015 kb on - strand, within AO356_06230at 1380.060 kb on - strand, within AO356_06230at 1380.060 kb on - strand, within AO356_06230at 1380.060 kb on - strand, within AO356_06230at 1380.062 kb on + strand, within AO356_06230at 1380.063 kb on - strand, within AO356_06230at 1380.063 kb on - strand, within AO356_06230at 1380.063 kb on - strand, within AO356_06230at 1380.312 kb on - strandat 1380.322 kb on + strandat 1380.322 kb on + strandat 1380.323 kb on - strandat 1380.331 kb on - strandat 1380.344 kb on + strandat 1380.372 kb on + strandat 1380.385 kb on + strandat 1380.385 kb on + strandat 1380.385 kb on + strandat 1380.386 kb on - strandat 1380.386 kb on - strandat 1380.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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1,379,392 - +0.4
1,379,567 + +0.6
1,379,594 + +0.3
1,379,594 + -0.3
1,379,594 + -1.3
1,379,595 - -0.3
1,379,595 - -0.9
1,379,595 - -0.1
1,379,616 + +0.5
1,379,616 + -1.5
1,379,616 + -1.4
1,379,616 + +0.2
1,379,616 + -0.5
1,379,616 + +0.4
1,379,616 + -1.6
1,379,616 + -0.2
1,379,616 + +0.9
1,379,616 + -0.7
1,379,616 + +0.6
1,379,616 + -0.7
1,379,617 - +0.2
1,379,617 - -0.6
1,379,617 - +0.5
1,379,617 - +0.4
1,379,617 - -0.0
1,379,617 - +1.0
1,379,617 - -0.2
1,379,660 + AO356_06230 0.13 -0.6
1,379,661 - AO356_06230 0.13 +0.3
1,379,722 + AO356_06230 0.22 -0.4
1,379,722 + AO356_06230 0.22 +0.5
1,379,722 + AO356_06230 0.22 +1.9
1,379,723 - AO356_06230 0.22 -0.3
1,379,725 + AO356_06230 0.22 +0.3
1,379,725 + AO356_06230 0.22 +0.5
1,379,725 + AO356_06230 0.22 +0.4
1,379,725 + AO356_06230 0.22 -2.0
1,379,725 + AO356_06230 0.22 +0.1
1,379,726 - AO356_06230 0.22 -0.9
1,379,841 - AO356_06230 0.38 -0.1
1,379,873 + AO356_06230 0.43 -1.3
1,379,873 + AO356_06230 0.43 -1.7
1,379,873 + AO356_06230 0.43 +0.5
1,379,873 + AO356_06230 0.43 +0.5
1,379,874 - AO356_06230 0.43 -0.6
1,379,874 - AO356_06230 0.43 -0.7
1,379,940 - AO356_06230 0.52 -0.5
1,379,940 - AO356_06230 0.52 -1.1
1,380,003 + AO356_06230 0.61 -0.5
1,380,004 - AO356_06230 0.61 -0.5
1,380,004 - AO356_06230 0.61 +1.2
1,380,015 - AO356_06230 0.63 -0.1
1,380,015 - AO356_06230 0.63 -0.7
1,380,060 - AO356_06230 0.69 -0.7
1,380,060 - AO356_06230 0.69 -0.3
1,380,060 - AO356_06230 0.69 -1.7
1,380,062 + AO356_06230 0.69 +1.3
1,380,063 - AO356_06230 0.69 -1.7
1,380,063 - AO356_06230 0.69 -0.8
1,380,063 - AO356_06230 0.69 -1.0
1,380,312 - +0.7
1,380,322 + +0.4
1,380,322 + +0.6
1,380,323 - +0.1
1,380,331 - -0.7
1,380,344 + +0.3
1,380,372 + -0.7
1,380,385 + +2.9
1,380,385 + +1.1
1,380,385 + -0.4
1,380,386 - +0.7
1,380,386 - -0.0
1,380,386 - -0.5

Or see this region's nucleotide sequence