Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02670 and AO356_02675 are separated by 13 nucleotides AO356_02675 and AO356_02680 are separated by 24 nucleotides
AO356_02670: AO356_02670 - hypothetical protein, at 586,083 to 587,189
_02670
AO356_02675: AO356_02675 - cell invasion protein, at 587,203 to 588,300
_02675
AO356_02680: AO356_02680 - cell invasion protein SipB, at 588,325 to 590,094
_02680
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1
2 at 586.276 kb on - strand, within AO356_02670 at 586.276 kb on - strand, within AO356_02670 at 586.289 kb on - strand, within AO356_02670 at 586.486 kb on + strand, within AO356_02670 at 586.534 kb on - strand, within AO356_02670 at 586.624 kb on + strand, within AO356_02670 at 586.646 kb on - strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 586.719 kb on + strand, within AO356_02670 at 587.154 kb on + strand at 587.154 kb on + strand at 587.155 kb on - strand at 587.159 kb on + strand at 587.171 kb on + strand at 587.171 kb on + strand at 587.172 kb on - strand at 587.172 kb on - strand at 587.189 kb on + strand at 587.189 kb on + strand at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.636 kb on + strand, within AO356_02675 at 587.637 kb on - strand, within AO356_02675 at 587.716 kb on - strand, within AO356_02675 at 588.288 kb on - strand at 588.291 kb on + strand at 588.291 kb on + strand at 588.291 kb on + strand at 588.292 kb on - strand at 588.292 kb on - strand at 588.292 kb on - strand at 588.303 kb on + strand at 588.303 kb on + strand at 588.303 kb on + strand at 588.304 kb on - strand at 588.304 kb on - strand at 588.307 kb on + strand at 588.307 kb on + strand at 588.308 kb on - strand at 588.426 kb on - strand at 588.426 kb on - strand at 588.481 kb on + strand at 588.907 kb on + strand, within AO356_02680 at 588.907 kb on + strand, within AO356_02680 at 588.907 kb on + strand, within AO356_02680 at 588.908 kb on - strand, within AO356_02680 at 588.922 kb on - strand, within AO356_02680 at 588.922 kb on - strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.923 kb on + strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 588.924 kb on - strand, within AO356_02680 at 589.190 kb on + strand, within AO356_02680
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 586,276 - AO356_02670 0.17 +0.3 586,276 - AO356_02670 0.17 +0.7 586,289 - AO356_02670 0.19 -0.6 586,486 + AO356_02670 0.36 +0.0 586,534 - AO356_02670 0.41 -0.8 586,624 + AO356_02670 0.49 -0.6 586,646 - AO356_02670 0.51 +0.2 586,719 + AO356_02670 0.57 -0.1 586,719 + AO356_02670 0.57 +0.9 587,154 + -0.0 587,154 + -0.2 587,155 - -0.6 587,159 + +0.6 587,171 + +0.1 587,171 + -1.1 587,172 - +0.8 587,172 - -0.5 587,189 + +0.4 587,189 + +0.2 587,636 + AO356_02675 0.39 +0.2 587,636 + AO356_02675 0.39 -0.2 587,636 + AO356_02675 0.39 +1.1 587,637 - AO356_02675 0.40 -1.1 587,716 - AO356_02675 0.47 +0.7 588,288 - +0.3 588,291 + +0.5 588,291 + -0.1 588,291 + -0.1 588,292 - -1.1 588,292 - -0.1 588,292 - -0.1 588,303 + +0.3 588,303 + -2.4 588,303 + +0.2 588,304 - -0.0 588,304 - -0.6 588,307 + +0.7 588,307 + +1.2 588,308 - -0.7 588,426 - -1.4 588,426 - -0.7 588,481 + -0.1 588,907 + AO356_02680 0.33 +1.6 588,907 + AO356_02680 0.33 -0.7 588,907 + AO356_02680 0.33 +0.8 588,908 - AO356_02680 0.33 +0.2 588,922 - AO356_02680 0.34 +0.2 588,922 - AO356_02680 0.34 -0.4 588,923 + AO356_02680 0.34 +0.2 588,923 + AO356_02680 0.34 -0.3 588,923 + AO356_02680 0.34 +0.2 588,923 + AO356_02680 0.34 +1.8 588,924 - AO356_02680 0.34 +0.0 588,924 - AO356_02680 0.34 -0.4 588,924 - AO356_02680 0.34 +0.5 589,190 + AO356_02680 0.49 -1.1
Or see this region's nucleotide sequence