Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02580 and AO356_02585 are separated by 355 nucleotides AO356_02585 and AO356_02590 are separated by 169 nucleotides AO356_02590 and AO356_02595 are separated by 231 nucleotides
AO356_02580: AO356_02580 - GntR family transcriptional regulator, at 566,294 to 567,058
_02580
AO356_02585: AO356_02585 - hypothetical protein, at 567,414 to 568,604
_02585
AO356_02590: AO356_02590 - hypothetical protein, at 568,774 to 569,118
_02590
AO356_02595: AO356_02595 - D-alanyl-D-alanine carboxypeptidase, at 569,350 to 570,816
_02595
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 566.520 kb on + strand, within AO356_02580 at 566.968 kb on + strand, within AO356_02580 at 566.968 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 567.013 kb on + strand at 567.102 kb on + strand at 567.102 kb on + strand at 567.105 kb on + strand at 567.130 kb on + strand at 567.131 kb on - strand at 567.155 kb on + strand at 567.184 kb on - strand at 567.184 kb on - strand at 567.184 kb on - strand at 567.208 kb on - strand at 567.235 kb on - strand at 567.235 kb on - strand at 567.235 kb on - strand at 567.241 kb on - strand at 567.241 kb on - strand at 567.241 kb on - strand at 567.386 kb on + strand at 567.386 kb on + strand at 567.387 kb on - strand at 567.387 kb on - strand at 567.387 kb on - strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.393 kb on + strand at 567.393 kb on + strand at 567.394 kb on - strand at 567.394 kb on - strand at 567.455 kb on + strand at 567.709 kb on - strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.912 kb on + strand, within AO356_02585 at 567.912 kb on + strand, within AO356_02585 at 567.913 kb on - strand, within AO356_02585 at 568.085 kb on + strand, within AO356_02585 at 568.085 kb on + strand, within AO356_02585 at 568.155 kb on + strand, within AO356_02585 at 568.156 kb on - strand, within AO356_02585 at 568.194 kb on - strand, within AO356_02585 at 568.302 kb on + strand, within AO356_02585 at 568.303 kb on - strand, within AO356_02585 at 568.705 kb on + strand at 568.932 kb on - strand, within AO356_02590 at 568.932 kb on - strand, within AO356_02590 at 569.133 kb on + strand at 569.133 kb on + strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.134 kb on - strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.137 kb on + strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.138 kb on - strand at 569.156 kb on - strand at 569.266 kb on + strand at 569.266 kb on + strand at 569.266 kb on + strand at 569.266 kb on + strand at 569.267 kb on - strand at 569.334 kb on + strand at 569.343 kb on - strand at 569.343 kb on - strand at 569.343 kb on - strand at 569.546 kb on - strand, within AO356_02595 at 569.546 kb on - strand, within AO356_02595 at 569.599 kb on + strand, within AO356_02595 at 569.600 kb on - strand, within AO356_02595
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 566,520 + AO356_02580 0.30 -0.8 566,968 + AO356_02580 0.88 +0.6 566,968 + AO356_02580 0.88 -0.4 566,976 + AO356_02580 0.89 -0.4 566,976 + AO356_02580 0.89 +0.2 566,976 + AO356_02580 0.89 -1.3 566,977 - AO356_02580 0.89 +1.2 566,977 - AO356_02580 0.89 +0.4 566,977 - AO356_02580 0.89 +0.2 567,013 + -0.7 567,102 + -2.0 567,102 + +0.2 567,105 + +0.5 567,130 + -0.6 567,131 - -0.4 567,155 + -0.4 567,184 - -0.4 567,184 - -0.4 567,184 - -0.9 567,208 - +1.4 567,235 - +0.0 567,235 - -0.8 567,235 - +0.7 567,241 - -0.1 567,241 - +1.3 567,241 - -1.6 567,386 + -2.3 567,386 + +1.8 567,387 - +0.1 567,387 - +0.5 567,387 - +0.2 567,391 + -0.9 567,391 + +1.2 567,391 + -1.2 567,391 + +0.0 567,391 + +1.6 567,391 + +0.7 567,392 - -0.3 567,392 - -0.1 567,392 - -0.5 567,392 - -0.4 567,392 - -0.5 567,392 - -0.2 567,392 - +0.9 567,392 - -0.9 567,392 - +0.0 567,392 - +0.7 567,392 - +1.2 567,393 + +0.8 567,393 + +0.9 567,394 - -0.8 567,394 - +0.4 567,455 + -0.2 567,709 - AO356_02585 0.25 +0.4 567,729 + AO356_02585 0.26 -0.7 567,729 + AO356_02585 0.26 +0.3 567,729 + AO356_02585 0.26 -0.8 567,729 + AO356_02585 0.26 +0.2 567,729 + AO356_02585 0.26 +2.2 567,730 - AO356_02585 0.27 +0.6 567,730 - AO356_02585 0.27 +0.3 567,730 - AO356_02585 0.27 +0.5 567,731 + AO356_02585 0.27 +1.2 567,731 + AO356_02585 0.27 +0.2 567,731 + AO356_02585 0.27 +1.1 567,731 + AO356_02585 0.27 -0.2 567,731 + AO356_02585 0.27 +0.3 567,731 + AO356_02585 0.27 +0.2 567,731 + AO356_02585 0.27 +0.5 567,732 - AO356_02585 0.27 +0.9 567,732 - AO356_02585 0.27 +0.8 567,732 - AO356_02585 0.27 +0.4 567,732 - AO356_02585 0.27 -0.2 567,732 - AO356_02585 0.27 +0.9 567,732 - AO356_02585 0.27 -0.8 567,733 + AO356_02585 0.27 +1.0 567,733 + AO356_02585 0.27 +0.6 567,733 + AO356_02585 0.27 +0.8 567,733 + AO356_02585 0.27 -2.0 567,733 + AO356_02585 0.27 -0.1 567,733 + AO356_02585 0.27 +0.4 567,733 + AO356_02585 0.27 +0.6 567,733 + AO356_02585 0.27 -1.8 567,734 - AO356_02585 0.27 +0.6 567,734 - AO356_02585 0.27 -0.4 567,734 - AO356_02585 0.27 -0.1 567,734 - AO356_02585 0.27 -0.4 567,734 - AO356_02585 0.27 -0.8 567,912 + AO356_02585 0.42 -0.8 567,912 + AO356_02585 0.42 +0.2 567,913 - AO356_02585 0.42 +2.8 568,085 + AO356_02585 0.56 +0.5 568,085 + AO356_02585 0.56 +1.0 568,155 + AO356_02585 0.62 +0.8 568,156 - AO356_02585 0.62 +0.2 568,194 - AO356_02585 0.65 -0.8 568,302 + AO356_02585 0.75 +0.0 568,303 - AO356_02585 0.75 +0.4 568,705 + +0.9 568,932 - AO356_02590 0.46 -1.1 568,932 - AO356_02590 0.46 -0.4 569,133 + +0.7 569,133 + +1.2 569,134 - -0.6 569,134 - -0.2 569,134 - -0.5 569,134 - -0.3 569,134 - +0.3 569,137 + +1.0 569,137 + -0.1 569,137 + -0.3 569,137 + +0.3 569,137 + +0.2 569,137 + +1.3 569,138 - +0.3 569,138 - -0.5 569,138 - -0.7 569,138 - -1.8 569,138 - -0.5 569,156 - +0.2 569,266 + +0.6 569,266 + +0.0 569,266 + -0.6 569,266 + +0.2 569,267 - +0.2 569,334 + +0.1 569,343 - -0.5 569,343 - -0.2 569,343 - -1.1 569,546 - AO356_02595 0.13 -2.3 569,546 - AO356_02595 0.13 +1.2 569,599 + AO356_02595 0.17 +0.4 569,600 - AO356_02595 0.17 +0.9
Or see this region's nucleotide sequence