Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00135 and AO356_00140 are separated by 70 nucleotides AO356_00140 and AO356_00150 are separated by 648 nucleotides
AO356_00135: AO356_00135 - hypothetical protein, at 26,542 to 27,123
_00135
AO356_00140: AO356_00140 - hypothetical protein, at 27,194 to 27,451
_00140
AO356_00150: AO356_00150 - ABC transporter substrate-binding protein, at 28,100 to 28,864
_00150
Position (kb) 27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 26.200 kb on + strand at 26.200 kb on + strand at 26.201 kb on - strand at 26.201 kb on - strand at 26.202 kb on + strand at 26.202 kb on + strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.203 kb on - strand at 26.244 kb on + strand at 26.244 kb on + strand at 26.264 kb on - strand at 26.347 kb on - strand at 26.347 kb on - strand at 26.349 kb on + strand at 26.350 kb on - strand at 26.578 kb on + strand at 26.578 kb on + strand at 26.578 kb on + strand at 26.630 kb on + strand, within AO356_00135 at 26.631 kb on - strand, within AO356_00135 at 26.631 kb on - strand, within AO356_00135 at 26.704 kb on + strand, within AO356_00135 at 26.761 kb on + strand, within AO356_00135 at 26.762 kb on - strand, within AO356_00135 at 26.762 kb on - strand, within AO356_00135 at 26.763 kb on + strand, within AO356_00135 at 26.764 kb on - strand, within AO356_00135 at 26.764 kb on - strand, within AO356_00135 at 26.764 kb on - strand, within AO356_00135 at 26.840 kb on - strand, within AO356_00135 at 26.854 kb on - strand, within AO356_00135 at 26.896 kb on + strand, within AO356_00135 at 26.896 kb on + strand, within AO356_00135 at 26.896 kb on + strand, within AO356_00135 at 26.897 kb on - strand, within AO356_00135 at 27.105 kb on + strand at 27.105 kb on + strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.106 kb on - strand at 27.139 kb on + strand at 27.139 kb on + strand at 27.139 kb on + strand at 27.140 kb on - strand at 27.140 kb on - strand at 27.140 kb on - strand at 27.239 kb on + strand, within AO356_00140 at 27.248 kb on + strand, within AO356_00140 at 27.248 kb on + strand, within AO356_00140 at 27.248 kb on + strand, within AO356_00140 at 27.249 kb on - strand, within AO356_00140 at 27.267 kb on - strand, within AO356_00140 at 27.372 kb on + strand, within AO356_00140 at 27.373 kb on - strand, within AO356_00140 at 27.373 kb on - strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.411 kb on + strand, within AO356_00140 at 27.412 kb on - strand, within AO356_00140 at 27.412 kb on - strand, within AO356_00140 at 27.412 kb on - strand, within AO356_00140 at 27.565 kb on + strand at 27.565 kb on + strand at 27.704 kb on + strand at 27.704 kb on + strand at 27.705 kb on - strand at 27.861 kb on + strand at 28.042 kb on + strand at 28.052 kb on + strand at 28.053 kb on - strand at 28.188 kb on + strand, within AO356_00150 at 28.199 kb on + strand, within AO356_00150 at 28.200 kb on - strand, within AO356_00150 at 28.269 kb on + strand, within AO356_00150 at 28.269 kb on + strand, within AO356_00150 at 28.385 kb on + strand, within AO356_00150 at 28.385 kb on + strand, within AO356_00150 at 28.385 kb on + strand, within AO356_00150 at 28.386 kb on - strand, within AO356_00150 at 28.386 kb on - strand, within AO356_00150
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 26,200 + -0.7 26,200 + +0.1 26,201 - +0.9 26,201 - -0.0 26,202 + +0.1 26,202 + -0.5 26,203 - +0.1 26,203 - +0.2 26,203 - +1.2 26,203 - -0.5 26,203 - -0.0 26,244 + -1.6 26,244 + -0.0 26,264 - -0.5 26,347 - +0.1 26,347 - +2.2 26,349 + -2.9 26,350 - -0.1 26,578 + -0.7 26,578 + -0.2 26,578 + +0.6 26,630 + AO356_00135 0.15 -0.6 26,631 - AO356_00135 0.15 -1.1 26,631 - AO356_00135 0.15 +1.7 26,704 + AO356_00135 0.28 +0.4 26,761 + AO356_00135 0.38 -0.5 26,762 - AO356_00135 0.38 +0.6 26,762 - AO356_00135 0.38 +0.4 26,763 + AO356_00135 0.38 -0.2 26,764 - AO356_00135 0.38 -0.3 26,764 - AO356_00135 0.38 +0.8 26,764 - AO356_00135 0.38 -0.2 26,840 - AO356_00135 0.51 -1.0 26,854 - AO356_00135 0.54 -0.3 26,896 + AO356_00135 0.61 -0.1 26,896 + AO356_00135 0.61 +0.4 26,896 + AO356_00135 0.61 -0.4 26,897 - AO356_00135 0.61 +0.1 27,105 + +1.0 27,105 + -0.5 27,106 - +0.5 27,106 - +0.1 27,106 - -0.1 27,106 - +0.0 27,106 - -0.6 27,106 - -0.6 27,139 + +0.6 27,139 + -0.5 27,139 + -0.7 27,140 - +0.1 27,140 - -2.0 27,140 - +0.4 27,239 + AO356_00140 0.17 -0.4 27,248 + AO356_00140 0.21 +1.1 27,248 + AO356_00140 0.21 +2.1 27,248 + AO356_00140 0.21 -0.3 27,249 - AO356_00140 0.21 -0.2 27,267 - AO356_00140 0.28 +0.7 27,372 + AO356_00140 0.69 -0.2 27,373 - AO356_00140 0.69 +2.5 27,373 - AO356_00140 0.69 -0.1 27,411 + AO356_00140 0.84 +0.7 27,411 + AO356_00140 0.84 +0.1 27,411 + AO356_00140 0.84 -1.9 27,411 + AO356_00140 0.84 +0.4 27,411 + AO356_00140 0.84 -0.2 27,412 - AO356_00140 0.84 -0.1 27,412 - AO356_00140 0.84 +0.1 27,412 - AO356_00140 0.84 +0.6 27,565 + -2.5 27,565 + -1.3 27,704 + +0.4 27,704 + +0.4 27,705 - -0.1 27,861 + +1.5 28,042 + -0.1 28,052 + +0.3 28,053 - -0.3 28,188 + AO356_00150 0.12 +0.5 28,199 + AO356_00150 0.13 +0.9 28,200 - AO356_00150 0.13 +0.1 28,269 + AO356_00150 0.22 -0.7 28,269 + AO356_00150 0.22 +1.7 28,385 + AO356_00150 0.37 +0.5 28,385 + AO356_00150 0.37 +1.2 28,385 + AO356_00150 0.37 +0.1 28,386 - AO356_00150 0.37 +0.1 28,386 - AO356_00150 0.37 +0.1
Or see this region's nucleotide sequence