Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004535 and ABIE53_004536 are separated by 70 nucleotides ABIE53_004536 and ABIE53_004537 are separated by 25 nucleotides ABIE53_004537 and ABIE53_004538 are separated by 284 nucleotides
ABIE53_004535: ABIE53_004535 - catechol 1,2-dioxygenase, at 724,111 to 725,046
_004535
ABIE53_004536: ABIE53_004536 - muconolactone D-isomerase, at 725,117 to 725,407
_004536
ABIE53_004537: ABIE53_004537 - muconate cycloisomerase, at 725,433 to 726,569
_004537
ABIE53_004538: ABIE53_004538 - MFS family permease, at 726,854 to 728,218
_004538
Position (kb) 725
726
727 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 724.478 kb on + strand, within ABIE53_004535 at 724.478 kb on + strand, within ABIE53_004535 at 724.479 kb on - strand, within ABIE53_004535 at 724.718 kb on + strand, within ABIE53_004535 at 724.718 kb on + strand, within ABIE53_004535 at 724.719 kb on - strand, within ABIE53_004535 at 724.799 kb on + strand, within ABIE53_004535 at 724.799 kb on + strand, within ABIE53_004535 at 724.825 kb on + strand, within ABIE53_004535 at 724.825 kb on + strand, within ABIE53_004535 at 724.826 kb on - strand, within ABIE53_004535 at 725.066 kb on - strand at 725.096 kb on - strand at 725.096 kb on - strand at 725.179 kb on + strand, within ABIE53_004536 at 725.179 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.250 kb on + strand, within ABIE53_004536 at 725.250 kb on + strand, within ABIE53_004536 at 725.251 kb on - strand, within ABIE53_004536 at 725.251 kb on - strand, within ABIE53_004536 at 725.400 kb on + strand at 725.435 kb on - strand at 725.476 kb on - strand at 725.542 kb on + strand at 725.684 kb on - strand, within ABIE53_004537 at 725.692 kb on - strand, within ABIE53_004537 at 725.692 kb on - strand, within ABIE53_004537 at 725.754 kb on + strand, within ABIE53_004537 at 725.769 kb on + strand, within ABIE53_004537 at 725.862 kb on + strand, within ABIE53_004537 at 726.025 kb on - strand, within ABIE53_004537 at 726.284 kb on + strand, within ABIE53_004537 at 726.349 kb on + strand, within ABIE53_004537 at 726.350 kb on - strand, within ABIE53_004537 at 726.350 kb on - strand, within ABIE53_004537 at 726.395 kb on - strand, within ABIE53_004537 at 726.452 kb on - strand, within ABIE53_004537 at 726.590 kb on - strand at 726.762 kb on - strand at 726.763 kb on + strand at 727.094 kb on - strand, within ABIE53_004538 at 727.128 kb on + strand, within ABIE53_004538 at 727.233 kb on - strand, within ABIE53_004538 at 727.233 kb on - strand, within ABIE53_004538 at 727.233 kb on - strand, within ABIE53_004538
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 724,478 + ABIE53_004535 0.39 -0.4 724,478 + ABIE53_004535 0.39 +0.8 724,479 - ABIE53_004535 0.39 -1.2 724,718 + ABIE53_004535 0.65 -0.8 724,718 + ABIE53_004535 0.65 +0.6 724,719 - ABIE53_004535 0.65 -0.4 724,799 + ABIE53_004535 0.74 -0.9 724,799 + ABIE53_004535 0.74 -0.2 724,825 + ABIE53_004535 0.76 +0.5 724,825 + ABIE53_004535 0.76 -1.4 724,826 - ABIE53_004535 0.76 -1.2 725,066 - -1.4 725,096 - +1.2 725,096 - +0.7 725,179 + ABIE53_004536 0.21 +4.2 725,179 + ABIE53_004536 0.21 -1.2 725,181 + ABIE53_004536 0.22 -0.5 725,181 + ABIE53_004536 0.22 +0.4 725,181 + ABIE53_004536 0.22 -0.1 725,181 + ABIE53_004536 0.22 -0.2 725,187 + ABIE53_004536 0.24 +0.2 725,187 + ABIE53_004536 0.24 +0.6 725,187 + ABIE53_004536 0.24 +0.4 725,187 + ABIE53_004536 0.24 -1.8 725,250 + ABIE53_004536 0.46 -0.9 725,250 + ABIE53_004536 0.46 +0.2 725,251 - ABIE53_004536 0.46 -0.2 725,251 - ABIE53_004536 0.46 -0.8 725,400 + -0.5 725,435 - -0.3 725,476 - +1.4 725,542 + +1.2 725,684 - ABIE53_004537 0.22 -2.1 725,692 - ABIE53_004537 0.23 -1.6 725,692 - ABIE53_004537 0.23 -0.8 725,754 + ABIE53_004537 0.28 -0.2 725,769 + ABIE53_004537 0.30 -0.6 725,862 + ABIE53_004537 0.38 +0.8 726,025 - ABIE53_004537 0.52 +0.6 726,284 + ABIE53_004537 0.75 +0.8 726,349 + ABIE53_004537 0.81 -0.6 726,350 - ABIE53_004537 0.81 -0.9 726,350 - ABIE53_004537 0.81 -0.7 726,395 - ABIE53_004537 0.85 -1.4 726,452 - ABIE53_004537 0.90 -1.0 726,590 - -0.7 726,762 - +1.0 726,763 + -0.5 727,094 - ABIE53_004538 0.18 +1.0 727,128 + ABIE53_004538 0.20 -0.7 727,233 - ABIE53_004538 0.28 -1.0 727,233 - ABIE53_004538 0.28 -0.6 727,233 - ABIE53_004538 0.28 -0.6
Or see this region's nucleotide sequence