Strain Fitness in Sinorhizobium meliloti 1021 around SMc04323

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04322 and SMc04323 are separated by 221 nucleotidesSMc04323 and SMc04324 are separated by 674 nucleotides SMc04322: SMc04322 - oxidoreductase, at 2,223,890 to 2,224,939 SMc04322 SMc04323: SMc04323 - aminotransferase, at 2,225,161 to 2,226,387 SMc04323 SMc04324: SMc04324 - hypothetical protein, at 2,227,062 to 2,227,451 SMc04324 Position (kb) 2225 2226 2227Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2224.321 kb on + strand, within SMc04322at 2224.322 kb on - strand, within SMc04322at 2224.351 kb on + strand, within SMc04322at 2224.367 kb on + strand, within SMc04322at 2224.367 kb on + strand, within SMc04322at 2224.448 kb on + strand, within SMc04322at 2224.449 kb on - strand, within SMc04322at 2224.449 kb on - strand, within SMc04322at 2224.449 kb on - strand, within SMc04322at 2224.449 kb on - strand, within SMc04322at 2224.859 kb on + strandat 2224.860 kb on - strandat 2224.865 kb on + strandat 2224.866 kb on - strandat 2224.933 kb on + strandat 2224.933 kb on + strandat 2225.429 kb on + strand, within SMc04323at 2225.666 kb on + strand, within SMc04323at 2225.667 kb on - strand, within SMc04323at 2225.667 kb on - strand, within SMc04323at 2225.686 kb on + strand, within SMc04323at 2225.687 kb on - strand, within SMc04323at 2225.744 kb on + strand, within SMc04323at 2225.744 kb on + strand, within SMc04323at 2225.760 kb on - strand, within SMc04323at 2225.918 kb on + strand, within SMc04323at 2225.918 kb on + strand, within SMc04323at 2225.960 kb on + strand, within SMc04323at 2225.960 kb on + strand, within SMc04323at 2225.960 kb on + strand, within SMc04323at 2225.961 kb on - strand, within SMc04323at 2225.964 kb on + strand, within SMc04323at 2225.964 kb on + strand, within SMc04323at 2225.964 kb on + strand, within SMc04323at 2225.965 kb on - strand, within SMc04323at 2225.972 kb on + strand, within SMc04323at 2225.972 kb on + strand, within SMc04323at 2225.973 kb on - strand, within SMc04323at 2225.973 kb on - strand, within SMc04323at 2226.002 kb on + strand, within SMc04323at 2226.003 kb on - strand, within SMc04323at 2226.059 kb on + strand, within SMc04323at 2226.095 kb on - strand, within SMc04323at 2226.182 kb on + strand, within SMc04323at 2226.227 kb on + strand, within SMc04323at 2226.228 kb on - strand, within SMc04323at 2226.228 kb on - strandat 2226.228 kb on - strand, within SMc04323at 2226.228 kb on - strand, within SMc04323at 2226.432 kb on + strandat 2226.445 kb on - strandat 2226.580 kb on - strandat 2226.629 kb on + strandat 2226.630 kb on - strandat 2226.640 kb on + strandat 2226.641 kb on - strandat 2226.777 kb on + strandat 2226.839 kb on + strandat 2226.839 kb on + strandat 2226.950 kb on - strandat 2227.063 kb on + strandat 2227.063 kb on + strandat 2227.063 kb on + strandat 2227.064 kb on - strandat 2227.064 kb on - strandat 2227.112 kb on + strand, within SMc04324at 2227.147 kb on + strand, within SMc04324at 2227.147 kb on + strand, within SMc04324at 2227.148 kb on - strand, within SMc04324at 2227.148 kb on - strand, within SMc04324at 2227.362 kb on - strand, within SMc04324

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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2,224,321 + SMc04322 0.41 -0.4
2,224,322 - SMc04322 0.41 -1.5
2,224,351 + SMc04322 0.44 +2.6
2,224,367 + SMc04322 0.45 -0.5
2,224,367 + SMc04322 0.45 +0.6
2,224,448 + SMc04322 0.53 -0.7
2,224,449 - SMc04322 0.53 -1.2
2,224,449 - SMc04322 0.53 -0.9
2,224,449 - SMc04322 0.53 -0.2
2,224,449 - SMc04322 0.53 +1.5
2,224,859 + +1.2
2,224,860 - -0.5
2,224,865 + -2.9
2,224,866 - -0.9
2,224,933 + +1.4
2,224,933 + +1.6
2,225,429 + SMc04323 0.22 +1.1
2,225,666 + SMc04323 0.41 +0.9
2,225,667 - SMc04323 0.41 +0.2
2,225,667 - SMc04323 0.41 +0.2
2,225,686 + SMc04323 0.43 -1.5
2,225,687 - SMc04323 0.43 +0.7
2,225,744 + SMc04323 0.48 -1.1
2,225,744 + SMc04323 0.48 -1.0
2,225,760 - SMc04323 0.49 +0.0
2,225,918 + SMc04323 0.62 -1.2
2,225,918 + SMc04323 0.62 -1.0
2,225,960 + SMc04323 0.65 +1.2
2,225,960 + SMc04323 0.65 +0.3
2,225,960 + SMc04323 0.65 +0.1
2,225,961 - SMc04323 0.65 -0.1
2,225,964 + SMc04323 0.65 -0.9
2,225,964 + SMc04323 0.65 +0.1
2,225,964 + SMc04323 0.65 -0.1
2,225,965 - SMc04323 0.66 +0.3
2,225,972 + SMc04323 0.66 +0.4
2,225,972 + SMc04323 0.66 -0.1
2,225,973 - SMc04323 0.66 -0.0
2,225,973 - SMc04323 0.66 +0.2
2,226,002 + SMc04323 0.69 +1.1
2,226,003 - SMc04323 0.69 -0.6
2,226,059 + SMc04323 0.73 -0.4
2,226,095 - SMc04323 0.76 +1.3
2,226,182 + SMc04323 0.83 -0.5
2,226,227 + SMc04323 0.87 +1.3
2,226,228 - SMc04323 0.87 -1.7
2,226,228 - -0.2
2,226,228 - SMc04323 0.87 +0.1
2,226,228 - SMc04323 0.87 +0.6
2,226,432 + +0.8
2,226,445 - -0.1
2,226,580 - -0.3
2,226,629 + -1.9
2,226,630 - -0.0
2,226,640 + +0.5
2,226,641 - +1.2
2,226,777 + +0.2
2,226,839 + +0.6
2,226,839 + +0.2
2,226,950 - +0.2
2,227,063 + -0.1
2,227,063 + +0.7
2,227,063 + +1.0
2,227,064 - +0.8
2,227,064 - -0.5
2,227,112 + SMc04324 0.13 +0.4
2,227,147 + SMc04324 0.22 -0.0
2,227,147 + SMc04324 0.22 +0.1
2,227,148 - SMc04324 0.22 -1.1
2,227,148 - SMc04324 0.22 +0.4
2,227,362 - SMc04324 0.77 +0.0

Or see this region's nucleotide sequence