Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04119 and SMc04118 are separated by 220 nucleotides SMc04118 and SMc04117 are separated by 7 nucleotides SMc04117 and SMc04116 are separated by 225 nucleotides
SMc04119: SMc04119 - phosphopentomutase, at 155,842 to 157,062
SMc04119
SMc04118: SMc04118 - hypothetical protein, at 157,283 to 157,867
SMc04118
SMc04117: SMc04117 - hypothetical protein, at 157,875 to 158,489
SMc04117
SMc04116: SMc04116 - transposase, at 158,715 to 159,878
SMc04116
Position (kb) 157
158
159 Strain fitness (log2 ratio) -1
0
1
2 at 157.118 kb on + strand at 157.118 kb on + strand at 157.235 kb on - strand at 157.235 kb on - strand at 157.329 kb on + strand at 157.329 kb on + strand at 157.329 kb on + strand at 157.330 kb on - strand at 157.575 kb on + strand, within SMc04118 at 157.591 kb on - strand, within SMc04118 at 157.746 kb on + strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.747 kb on - strand, within SMc04118 at 157.879 kb on + strand at 157.880 kb on - strand at 157.918 kb on + strand at 157.919 kb on - strand at 157.999 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.002 kb on + strand, within SMc04117 at 158.010 kb on + strand, within SMc04117 at 158.020 kb on + strand, within SMc04117 at 158.291 kb on + strand, within SMc04117 at 158.527 kb on + strand at 158.574 kb on - strand at 158.574 kb on - strand at 158.651 kb on + strand at 158.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 157,118 + -1.1 157,118 + -0.1 157,235 - +0.5 157,235 - -0.9 157,329 + -1.1 157,329 + +1.8 157,329 + +0.1 157,330 - -1.0 157,575 + SMc04118 0.50 +0.0 157,591 - SMc04118 0.53 -0.1 157,746 + SMc04118 0.79 -0.2 157,747 - SMc04118 0.79 +0.9 157,747 - SMc04118 0.79 -0.6 157,747 - SMc04118 0.79 -1.0 157,879 + -0.2 157,880 - +0.1 157,918 + -0.4 157,919 - -0.5 157,999 + SMc04117 0.20 -0.4 158,002 + SMc04117 0.21 -0.8 158,002 + SMc04117 0.21 -1.7 158,002 + SMc04117 0.21 -1.3 158,002 + SMc04117 0.21 -0.2 158,010 + SMc04117 0.22 -1.0 158,020 + SMc04117 0.24 -0.5 158,291 + SMc04117 0.68 +0.8 158,527 + -1.7 158,574 - -0.5 158,574 - +0.1 158,651 + -0.3 158,673 - -0.1
Or see this region's nucleotide sequence