Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02737 and SMc02738 are separated by 156 nucleotides SMc02738 and SMc02739 overlap by 4 nucleotides
SMc02737: SMc02737 - glycine betaine-binding ABC transporter protein, at 2,591,143 to 2,592,099
SMc02737
SMc02738: SMc02738 - glycine betaine transport system permease ABC transporter protein, at 2,592,256 to 2,593,101
SMc02738
SMc02739: SMc02739 - glycine betaine transport ATP-binding ABC transporter protein, at 2,593,098 to 2,594,147
SMc02739
Position (kb)
2592
2593
2594 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2591.366 kb on - strand, within SMc02737 at 2591.455 kb on - strand, within SMc02737 at 2591.497 kb on + strand, within SMc02737 at 2591.590 kb on + strand, within SMc02737 at 2591.817 kb on - strand, within SMc02737 at 2591.817 kb on - strand, within SMc02737 at 2591.831 kb on - strand, within SMc02737 at 2592.119 kb on - strand at 2592.391 kb on + strand, within SMc02738 at 2592.392 kb on - strand, within SMc02738 at 2592.417 kb on + strand, within SMc02738 at 2592.520 kb on + strand, within SMc02738 at 2592.521 kb on - strand at 2592.534 kb on + strand, within SMc02738 at 2592.602 kb on + strand, within SMc02738 at 2592.603 kb on - strand, within SMc02738 at 2592.603 kb on - strand, within SMc02738 at 2592.629 kb on - strand, within SMc02738 at 2592.629 kb on - strand, within SMc02738 at 2592.683 kb on - strand, within SMc02738 at 2592.722 kb on + strand, within SMc02738 at 2593.001 kb on + strand, within SMc02738 at 2593.002 kb on - strand, within SMc02738 at 2593.035 kb on + strand at 2593.427 kb on + strand, within SMc02739 at 2593.427 kb on + strand, within SMc02739 at 2593.428 kb on - strand, within SMc02739 at 2593.428 kb on - strand, within SMc02739 at 2593.888 kb on - strand, within SMc02739 at 2594.059 kb on + strand at 2594.059 kb on + strand at 2594.059 kb on + strand at 2594.060 kb on - strand at 2594.060 kb on - strand at 2594.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 2,591,366 - SMc02737 0.23 -0.1 2,591,455 - SMc02737 0.33 -0.2 2,591,497 + SMc02737 0.37 -1.0 2,591,590 + SMc02737 0.47 +1.4 2,591,817 - SMc02737 0.70 -0.7 2,591,817 - SMc02737 0.70 +0.1 2,591,831 - SMc02737 0.72 -0.6 2,592,119 - +1.2 2,592,391 + SMc02738 0.16 -0.3 2,592,392 - SMc02738 0.16 -1.2 2,592,417 + SMc02738 0.19 -0.4 2,592,520 + SMc02738 0.31 -1.2 2,592,521 - +2.4 2,592,534 + SMc02738 0.33 -0.8 2,592,602 + SMc02738 0.41 -4.2 2,592,603 - SMc02738 0.41 -0.8 2,592,603 - SMc02738 0.41 -1.9 2,592,629 - SMc02738 0.44 -0.8 2,592,629 - SMc02738 0.44 -0.3 2,592,683 - SMc02738 0.50 -1.2 2,592,722 + SMc02738 0.55 -2.5 2,593,001 + SMc02738 0.88 -1.5 2,593,002 - SMc02738 0.88 -1.6 2,593,035 + -0.9 2,593,427 + SMc02739 0.31 +0.8 2,593,427 + SMc02739 0.31 -0.5 2,593,428 - SMc02739 0.31 -1.2 2,593,428 - SMc02739 0.31 -0.4 2,593,888 - SMc02739 0.75 +1.8 2,594,059 + -0.8 2,594,059 + -0.9 2,594,059 + -0.5 2,594,060 - +1.2 2,594,060 - -0.3 2,594,060 - -0.5
Or see this region's nucleotide sequence