Strain Fitness in Sinorhizobium meliloti 1021 around SMc02686

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02685 and SMc02686 are separated by 284 nucleotidesSMc02686 and SMc02687 are separated by 40 nucleotidesSMc02687 and SMc02688 are separated by 73 nucleotides SMc02685: SMc02685 - hypothetical protein, at 2,534,334 to 2,535,212 SMc02685 SMc02686: SMc02686 - ribose-phosphate pyrophosphokinase, at 2,535,497 to 2,536,429 SMc02686 SMc02687: SMc02687 - hypothetical protein, at 2,536,470 to 2,537,300 SMc02687 SMc02688: SMc02688 - hypothetical protein, at 2,537,374 to 2,537,751 SMc02688 Position (kb) 2535 2536 2537Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2534.604 kb on - strand, within SMc02685at 2534.604 kb on - strand, within SMc02685at 2534.610 kb on + strand, within SMc02685at 2534.610 kb on + strand, within SMc02685at 2534.675 kb on - strand, within SMc02685at 2534.837 kb on + strand, within SMc02685at 2534.837 kb on + strand, within SMc02685at 2534.838 kb on - strand, within SMc02685at 2535.037 kb on - strand, within SMc02685at 2535.049 kb on + strand, within SMc02685at 2535.180 kb on + strandat 2535.181 kb on - strandat 2535.181 kb on - strandat 2535.211 kb on - strandat 2536.434 kb on + strandat 2536.490 kb on + strandat 2536.490 kb on + strandat 2536.490 kb on + strandat 2536.490 kb on + strandat 2536.490 kb on + strandat 2536.490 kb on + strandat 2536.491 kb on - strandat 2536.491 kb on - strandat 2536.491 kb on - strandat 2536.491 kb on - strandat 2536.491 kb on - strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.492 kb on + strandat 2536.493 kb on - strandat 2536.493 kb on - strandat 2536.493 kb on - strandat 2536.493 kb on - strandat 2536.493 kb on - strandat 2536.493 kb on - strandat 2536.493 kb on - strandat 2536.493 kb on - strandat 2536.531 kb on + strandat 2536.532 kb on - strandat 2536.657 kb on + strand, within SMc02687at 2536.658 kb on - strand, within SMc02687at 2536.658 kb on - strand, within SMc02687at 2536.658 kb on - strand, within SMc02687at 2536.753 kb on + strand, within SMc02687at 2537.097 kb on + strand, within SMc02687at 2537.097 kb on + strand, within SMc02687

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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2,534,604 - SMc02685 0.31 -0.1
2,534,604 - SMc02685 0.31 -1.7
2,534,610 + SMc02685 0.31 +0.3
2,534,610 + SMc02685 0.31 +0.2
2,534,675 - SMc02685 0.39 +0.6
2,534,837 + SMc02685 0.57 -0.7
2,534,837 + SMc02685 0.57 -0.5
2,534,838 - SMc02685 0.57 -0.6
2,535,037 - SMc02685 0.80 -1.4
2,535,049 + SMc02685 0.81 +1.5
2,535,180 + -0.4
2,535,181 - -1.7
2,535,181 - +0.1
2,535,211 - +0.4
2,536,434 + -0.8
2,536,490 + +0.7
2,536,490 + +0.1
2,536,490 + +1.1
2,536,490 + +1.0
2,536,490 + +0.4
2,536,490 + -1.0
2,536,491 - +0.4
2,536,491 - -0.1
2,536,491 - +1.4
2,536,491 - +3.0
2,536,491 - +1.0
2,536,492 + +1.3
2,536,492 + -0.5
2,536,492 + -1.4
2,536,492 + -1.5
2,536,492 + -0.6
2,536,492 + -0.2
2,536,492 + +1.0
2,536,492 + +0.5
2,536,492 + -0.5
2,536,493 - +3.2
2,536,493 - -0.1
2,536,493 - +0.0
2,536,493 - -1.7
2,536,493 - +1.0
2,536,493 - +0.5
2,536,493 - +1.8
2,536,493 - -0.8
2,536,531 + +0.6
2,536,532 - +0.3
2,536,657 + SMc02687 0.23 -0.7
2,536,658 - SMc02687 0.23 -1.9
2,536,658 - SMc02687 0.23 +0.5
2,536,658 - SMc02687 0.23 -1.0
2,536,753 + SMc02687 0.34 -1.7
2,537,097 + SMc02687 0.75 -1.5
2,537,097 + SMc02687 0.75 -0.5

Or see this region's nucleotide sequence