Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02569 and SMc02570 overlap by 4 nucleotides SMc02570 and SMc02572 are separated by 32 nucleotides SMc02572 and SMc02573 overlap by 1 nucleotides SMc02573 and SMc02574 are separated by 26 nucleotides
SMc02569: SMc02569 - imidazole glycerol phosphate synthase subunit HisF, at 57,909 to 58,685
SMc02569
SMc02570: SMc02570 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 58,682 to 59,425
SMc02570
SMc02572: SMc02572 - imidazole glycerol phosphate synthase subunit HisH, at 59,458 to 60,108
SMc02572
SMc02573: SMc02573 - hypothetical protein, at 60,108 to 60,581
SMc02573
SMc02574: SMc02574 - imidazoleglycerol-phosphate dehydratase, at 60,608 to 61,216
SMc02574
Position (kb)
59
60
61 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 58.567 kb on + strand, within SMc02569 at 58.665 kb on + strand at 58.685 kb on + strand at 58.685 kb on + strand at 58.686 kb on - strand at 58.686 kb on - strand at 58.932 kb on + strand, within SMc02570 at 58.932 kb on + strand, within SMc02570 at 58.932 kb on + strand, within SMc02570 at 58.932 kb on + strand, within SMc02570 at 58.933 kb on - strand, within SMc02570 at 58.933 kb on - strand, within SMc02570 at 59.343 kb on + strand, within SMc02570 at 59.343 kb on + strand, within SMc02570 at 59.344 kb on - strand, within SMc02570 at 59.344 kb on - strand, within SMc02570 at 59.627 kb on + strand, within SMc02572 at 59.627 kb on + strand, within SMc02572 at 59.628 kb on - strand, within SMc02572 at 60.232 kb on + strand, within SMc02573 at 60.233 kb on - strand, within SMc02573 at 60.572 kb on - strand at 60.572 kb on - strand at 60.572 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.736 kb on - strand, within SMc02574 at 60.736 kb on - strand at 60.927 kb on + strand, within SMc02574 at 60.928 kb on - strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 58,567 + SMc02569 0.85 -0.8 58,665 + -1.0 58,685 + -0.5 58,685 + +1.1 58,686 - -1.8 58,686 - -1.1 58,932 + SMc02570 0.34 +0.3 58,932 + SMc02570 0.34 -0.1 58,932 + SMc02570 0.34 +0.1 58,932 + SMc02570 0.34 -0.7 58,933 - SMc02570 0.34 -0.8 58,933 - SMc02570 0.34 +0.3 59,343 + SMc02570 0.89 -0.3 59,343 + SMc02570 0.89 -0.2 59,344 - SMc02570 0.89 +0.8 59,344 - SMc02570 0.89 -0.4 59,627 + SMc02572 0.26 -1.1 59,627 + SMc02572 0.26 -0.9 59,628 - SMc02572 0.26 +0.4 60,232 + SMc02573 0.26 -1.8 60,233 - SMc02573 0.26 -1.1 60,572 - -0.6 60,572 - +0.5 60,572 - +1.4 60,598 - -1.5 60,598 - +0.2 60,598 - +0.1 60,736 - SMc02574 0.21 -1.0 60,736 - +2.1 60,927 + SMc02574 0.52 -1.9 60,928 - SMc02574 0.53 +0.4 61,084 + SMc02574 0.78 -0.4 61,084 + SMc02574 0.78 -2.7 61,085 - SMc02574 0.78 -0.1 61,085 - SMc02574 0.78 +1.1 61,085 - SMc02574 0.78 -0.7 61,085 - SMc02574 0.78 +0.2
Or see this region's nucleotide sequence