Strain Fitness in Sinorhizobium meliloti 1021 around SMc02036

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02035 and SMc02036 are separated by 151 nucleotidesSMc02036 and SMc02037 are separated by 241 nucleotides SMc02035: SMc02035 - oxidoreductase, at 2,741,371 to 2,742,411 SMc02035 SMc02036: SMc02036 - transcriptional regulator, at 2,742,563 to 2,743,270 SMc02036 SMc02037: SMc02037 - oxidoreductase, at 2,743,512 to 2,744,282 SMc02037 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -2 -1 0 1at 2741.695 kb on - strand, within SMc02035at 2741.867 kb on + strand, within SMc02035at 2741.867 kb on + strand, within SMc02035at 2742.037 kb on - strand, within SMc02035at 2742.159 kb on - strand, within SMc02035at 2742.275 kb on + strand, within SMc02035at 2742.424 kb on + strandat 2742.424 kb on + strandat 2742.425 kb on - strandat 2742.425 kb on - strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.442 kb on - strandat 2742.454 kb on + strandat 2742.455 kb on - strandat 2742.508 kb on + strandat 2742.509 kb on - strandat 2742.509 kb on - strandat 2743.004 kb on + strand, within SMc02036at 2743.020 kb on - strand, within SMc02036at 2743.192 kb on + strand, within SMc02036at 2743.194 kb on - strand, within SMc02036at 2743.516 kb on - strandat 2743.698 kb on + strand, within SMc02037at 2743.699 kb on - strand, within SMc02037at 2743.699 kb on - strand, within SMc02037at 2743.898 kb on + strand, within SMc02037at 2743.959 kb on + strand, within SMc02037at 2743.959 kb on + strand, within SMc02037at 2743.960 kb on - strand, within SMc02037at 2743.992 kb on + strand, within SMc02037at 2743.993 kb on - strand, within SMc02037at 2744.088 kb on + strand, within SMc02037at 2744.232 kb on + strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.234 kb on + strandat 2744.234 kb on + strandat 2744.268 kb on + strandat 2744.269 kb on - strandat 2744.269 kb on - strandat 2744.269 kb on - strandat 2744.269 kb on - strandat 2744.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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2,741,695 - SMc02035 0.31 -0.7
2,741,867 + SMc02035 0.48 +0.9
2,741,867 + SMc02035 0.48 -0.4
2,742,037 - SMc02035 0.64 -1.6
2,742,159 - SMc02035 0.76 +0.0
2,742,275 + SMc02035 0.87 -1.0
2,742,424 + +0.6
2,742,424 + -1.1
2,742,425 - -0.9
2,742,425 - -0.2
2,742,441 + -1.2
2,742,441 + +0.0
2,742,441 + -1.0
2,742,441 + +0.3
2,742,441 + -0.4
2,742,441 + -1.7
2,742,442 - -0.2
2,742,454 + -0.8
2,742,455 - -1.3
2,742,508 + +0.6
2,742,509 - -1.0
2,742,509 - -1.2
2,743,004 + SMc02036 0.62 +0.9
2,743,020 - SMc02036 0.65 -0.7
2,743,192 + SMc02036 0.89 +0.5
2,743,194 - SMc02036 0.89 -1.1
2,743,516 - +0.2
2,743,698 + SMc02037 0.24 +0.5
2,743,699 - SMc02037 0.24 -1.3
2,743,699 - SMc02037 0.24 +0.3
2,743,898 + SMc02037 0.50 -0.3
2,743,959 + SMc02037 0.58 -0.1
2,743,959 + SMc02037 0.58 -0.0
2,743,960 - SMc02037 0.58 -0.5
2,743,992 + SMc02037 0.62 -0.5
2,743,993 - SMc02037 0.62 +1.0
2,744,088 + SMc02037 0.75 +1.5
2,744,232 + +0.1
2,744,233 - +0.2
2,744,233 - -0.6
2,744,233 - +0.3
2,744,233 - +0.4
2,744,233 - +0.2
2,744,234 + +0.7
2,744,234 + -0.4
2,744,268 + +0.9
2,744,269 - -0.1
2,744,269 - -0.8
2,744,269 - -0.1
2,744,269 - -0.6
2,744,269 - -1.8

Or see this region's nucleotide sequence