Strain Fitness in Sinorhizobium meliloti 1021 around SMc01960

Experiment: perchlorate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01994 and SMc01959 overlap by 4 nucleotidesSMc01959 and SMc01960 are separated by 354 nucleotidesSMc01960 and SMc01961 are separated by 126 nucleotides SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873 SMc01994 SMc01959: SMc01959 - transposase ISRM1, at 2,681,870 to 2,682,241 SMc01959 SMc01960: SMc01960 - oxidoreductase, at 2,682,596 to 2,683,162 SMc01960 SMc01961: SMc01961 - hypothetical protein, at 2,683,289 to 2,684,242 SMc01961 Position (kb) 2682 2683 2684Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2682.288 kb on + strandat 2682.288 kb on + strandat 2682.292 kb on + strandat 2682.292 kb on + strandat 2682.292 kb on + strandat 2682.473 kb on + strandat 2682.593 kb on - strandat 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.852 kb on - strand, within SMc01960at 2682.852 kb on - strand, within SMc01960at 2682.918 kb on + strand, within SMc01960at 2682.919 kb on - strand, within SMc01960at 2683.020 kb on + strand, within SMc01960at 2683.022 kb on + strand, within SMc01960at 2683.022 kb on + strand, within SMc01960at 2683.449 kb on + strand, within SMc01961at 2683.464 kb on + strand, within SMc01961at 2683.464 kb on + strand, within SMc01961at 2683.465 kb on - strand, within SMc01961at 2683.692 kb on + strand, within SMc01961at 2684.094 kb on + strand, within SMc01961at 2684.095 kb on - strand, within SMc01961at 2684.106 kb on + strand, within SMc01961at 2684.106 kb on + strand, within SMc01961at 2684.106 kb on + strand, within SMc01961at 2684.106 kb on + strand, within SMc01961at 2684.107 kb on - strand, within SMc01961at 2684.107 kb on - strand, within SMc01961at 2684.107 kb on - strand, within SMc01961at 2684.107 kb on - strand, within SMc01961

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
remove
2,682,288 + +1.0
2,682,288 + -0.1
2,682,292 + +0.8
2,682,292 + +0.0
2,682,292 + +1.1
2,682,473 + +0.7
2,682,593 - -0.7
2,682,851 + SMc01960 0.45 +0.1
2,682,851 + SMc01960 0.45 +0.0
2,682,851 + SMc01960 0.45 -0.8
2,682,851 + SMc01960 0.45 +0.1
2,682,851 + SMc01960 0.45 -1.1
2,682,852 - SMc01960 0.45 -0.8
2,682,852 - SMc01960 0.45 +2.8
2,682,918 + SMc01960 0.57 -1.6
2,682,919 - SMc01960 0.57 -0.1
2,683,020 + SMc01960 0.75 -2.0
2,683,022 + SMc01960 0.75 -1.2
2,683,022 + SMc01960 0.75 -0.1
2,683,449 + SMc01961 0.17 -1.4
2,683,464 + SMc01961 0.18 -0.4
2,683,464 + SMc01961 0.18 +0.7
2,683,465 - SMc01961 0.18 -1.5
2,683,692 + SMc01961 0.42 +1.3
2,684,094 + SMc01961 0.84 +0.7
2,684,095 - SMc01961 0.84 -0.4
2,684,106 + SMc01961 0.86 -0.5
2,684,106 + SMc01961 0.86 +1.2
2,684,106 + SMc01961 0.86 +0.9
2,684,106 + SMc01961 0.86 -1.2
2,684,107 - SMc01961 0.86 +0.1
2,684,107 - SMc01961 0.86 -1.3
2,684,107 - SMc01961 0.86 +0.3
2,684,107 - SMc01961 0.86 +0.3

Or see this region's nucleotide sequence