Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01994 and SMc01959 overlap by 4 nucleotides SMc01959 and SMc01960 are separated by 354 nucleotides SMc01960 and SMc01961 are separated by 126 nucleotides
SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873
SMc01994
SMc01959: SMc01959 - transposase ISRM1, at 2,681,870 to 2,682,241
SMc01959
SMc01960: SMc01960 - oxidoreductase, at 2,682,596 to 2,683,162
SMc01960
SMc01961: SMc01961 - hypothetical protein, at 2,683,289 to 2,684,242
SMc01961
Position (kb)
2682
2683
2684 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2682.288 kb on + strand at 2682.288 kb on + strand at 2682.292 kb on + strand at 2682.292 kb on + strand at 2682.292 kb on + strand at 2682.473 kb on + strand at 2682.593 kb on - strand at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.852 kb on - strand, within SMc01960 at 2682.852 kb on - strand, within SMc01960 at 2682.918 kb on + strand, within SMc01960 at 2682.919 kb on - strand, within SMc01960 at 2683.020 kb on + strand, within SMc01960 at 2683.022 kb on + strand, within SMc01960 at 2683.022 kb on + strand, within SMc01960 at 2683.449 kb on + strand, within SMc01961 at 2683.464 kb on + strand, within SMc01961 at 2683.464 kb on + strand, within SMc01961 at 2683.465 kb on - strand, within SMc01961 at 2683.692 kb on + strand, within SMc01961 at 2684.094 kb on + strand, within SMc01961 at 2684.095 kb on - strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 2,682,288 + +1.0 2,682,288 + -0.1 2,682,292 + +0.8 2,682,292 + +0.0 2,682,292 + +1.1 2,682,473 + +0.7 2,682,593 - -0.7 2,682,851 + SMc01960 0.45 +0.1 2,682,851 + SMc01960 0.45 +0.0 2,682,851 + SMc01960 0.45 -0.8 2,682,851 + SMc01960 0.45 +0.1 2,682,851 + SMc01960 0.45 -1.1 2,682,852 - SMc01960 0.45 -0.8 2,682,852 - SMc01960 0.45 +2.8 2,682,918 + SMc01960 0.57 -1.6 2,682,919 - SMc01960 0.57 -0.1 2,683,020 + SMc01960 0.75 -2.0 2,683,022 + SMc01960 0.75 -1.2 2,683,022 + SMc01960 0.75 -0.1 2,683,449 + SMc01961 0.17 -1.4 2,683,464 + SMc01961 0.18 -0.4 2,683,464 + SMc01961 0.18 +0.7 2,683,465 - SMc01961 0.18 -1.5 2,683,692 + SMc01961 0.42 +1.3 2,684,094 + SMc01961 0.84 +0.7 2,684,095 - SMc01961 0.84 -0.4 2,684,106 + SMc01961 0.86 -0.5 2,684,106 + SMc01961 0.86 +1.2 2,684,106 + SMc01961 0.86 +0.9 2,684,106 + SMc01961 0.86 -1.2 2,684,107 - SMc01961 0.86 +0.1 2,684,107 - SMc01961 0.86 -1.3 2,684,107 - SMc01961 0.86 +0.3 2,684,107 - SMc01961 0.86 +0.3
Or see this region's nucleotide sequence