Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01406 and SMc01407 are separated by 186 nucleotides SMc01407 and SMc01408 are separated by 194 nucleotides
SMc01406: SMc01406 - transcriptional regulator, at 2,248,249 to 2,249,667
SMc01406
SMc01407: SMc01407 - pyridoxine 5'-phosphate synthase, at 2,249,854 to 2,250,606
SMc01407
SMc01408: SMc01408 - hypothetical protein, at 2,250,801 to 2,251,511
SMc01408
Position (kb)
2249
2250
2251 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2248.928 kb on + strand, within SMc01406 at 2248.946 kb on + strand, within SMc01406 at 2248.947 kb on - strand at 2249.025 kb on + strand, within SMc01406 at 2249.025 kb on + strand, within SMc01406 at 2249.025 kb on + strand, within SMc01406 at 2249.025 kb on + strand, within SMc01406 at 2249.026 kb on - strand, within SMc01406 at 2249.054 kb on + strand, within SMc01406 at 2249.055 kb on - strand, within SMc01406 at 2249.058 kb on + strand, within SMc01406 at 2249.058 kb on + strand, within SMc01406 at 2249.058 kb on + strand, within SMc01406 at 2249.058 kb on + strand, within SMc01406 at 2249.058 kb on + strand, within SMc01406 at 2249.059 kb on - strand, within SMc01406 at 2249.059 kb on - strand, within SMc01406 at 2249.059 kb on - strand, within SMc01406 at 2249.137 kb on - strand, within SMc01406 at 2249.235 kb on - strand, within SMc01406 at 2249.392 kb on + strand, within SMc01406 at 2249.393 kb on - strand, within SMc01406 at 2249.393 kb on - strand, within SMc01406 at 2249.420 kb on + strand, within SMc01406 at 2249.420 kb on + strand, within SMc01406 at 2249.421 kb on - strand, within SMc01406 at 2249.421 kb on - strand, within SMc01406 at 2249.421 kb on - strand, within SMc01406 at 2249.421 kb on - strand, within SMc01406 at 2249.421 kb on - strand, within SMc01406 at 2249.424 kb on + strand, within SMc01406 at 2249.424 kb on + strand, within SMc01406 at 2249.424 kb on + strand, within SMc01406 at 2249.424 kb on + strand, within SMc01406 at 2249.425 kb on - strand, within SMc01406 at 2249.425 kb on - strand, within SMc01406 at 2249.425 kb on - strand, within SMc01406 at 2249.475 kb on - strand, within SMc01406 at 2249.603 kb on + strand at 2249.603 kb on + strand at 2249.693 kb on + strand at 2249.738 kb on + strand at 2250.780 kb on - strand at 2250.883 kb on - strand, within SMc01408 at 2250.896 kb on + strand, within SMc01408 at 2251.025 kb on + strand, within SMc01408 at 2251.026 kb on - strand, within SMc01408 at 2251.055 kb on + strand, within SMc01408 at 2251.068 kb on + strand, within SMc01408 at 2251.068 kb on + strand, within SMc01408 at 2251.068 kb on + strand, within SMc01408 at 2251.069 kb on - strand, within SMc01408 at 2251.069 kb on - strand, within SMc01408 at 2251.069 kb on - strand, within SMc01408 at 2251.069 kb on - strand, within SMc01408 at 2251.069 kb on - strand, within SMc01408 at 2251.069 kb on - strand at 2251.074 kb on + strand, within SMc01408 at 2251.074 kb on + strand, within SMc01408 at 2251.074 kb on + strand, within SMc01408 at 2251.074 kb on + strand, within SMc01408 at 2251.074 kb on + strand, within SMc01408 at 2251.075 kb on - strand, within SMc01408 at 2251.075 kb on - strand, within SMc01408 at 2251.075 kb on - strand, within SMc01408 at 2251.075 kb on - strand, within SMc01408 at 2251.075 kb on - strand, within SMc01408 at 2251.076 kb on + strand, within SMc01408 at 2251.076 kb on + strand, within SMc01408 at 2251.076 kb on + strand, within SMc01408 at 2251.076 kb on + strand, within SMc01408 at 2251.076 kb on + strand, within SMc01408 at 2251.076 kb on + strand, within SMc01408 at 2251.077 kb on - strand, within SMc01408 at 2251.077 kb on - strand, within SMc01408 at 2251.251 kb on + strand, within SMc01408 at 2251.251 kb on + strand, within SMc01408 at 2251.251 kb on + strand, within SMc01408 at 2251.252 kb on - strand, within SMc01408 at 2251.284 kb on + strand, within SMc01408 at 2251.284 kb on + strand, within SMc01408 at 2251.285 kb on - strand, within SMc01408 at 2251.285 kb on - strand, within SMc01408 at 2251.285 kb on - strand, within SMc01408 at 2251.285 kb on - strand, within SMc01408 at 2251.285 kb on - strand, within SMc01408 at 2251.494 kb on + strand at 2251.496 kb on + strand at 2251.497 kb on - strand at 2251.497 kb on - strand at 2251.497 kb on - strand at 2251.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 2,248,928 + SMc01406 0.48 -1.3 2,248,946 + SMc01406 0.49 +2.0 2,248,947 - +0.3 2,249,025 + SMc01406 0.55 -2.0 2,249,025 + SMc01406 0.55 -0.7 2,249,025 + SMc01406 0.55 +1.2 2,249,025 + SMc01406 0.55 -0.4 2,249,026 - SMc01406 0.55 +0.5 2,249,054 + SMc01406 0.57 -0.5 2,249,055 - SMc01406 0.57 +1.0 2,249,058 + SMc01406 0.57 +1.3 2,249,058 + SMc01406 0.57 +0.9 2,249,058 + SMc01406 0.57 +0.4 2,249,058 + SMc01406 0.57 -0.2 2,249,058 + SMc01406 0.57 -0.5 2,249,059 - SMc01406 0.57 -0.2 2,249,059 - SMc01406 0.57 +0.8 2,249,059 - SMc01406 0.57 -1.3 2,249,137 - SMc01406 0.63 +0.3 2,249,235 - SMc01406 0.69 -0.1 2,249,392 + SMc01406 0.81 +0.3 2,249,393 - SMc01406 0.81 -0.3 2,249,393 - SMc01406 0.81 +0.5 2,249,420 + SMc01406 0.83 -0.0 2,249,420 + SMc01406 0.83 +1.4 2,249,421 - SMc01406 0.83 +0.2 2,249,421 - SMc01406 0.83 +0.0 2,249,421 - SMc01406 0.83 -0.7 2,249,421 - SMc01406 0.83 +0.1 2,249,421 - SMc01406 0.83 -0.7 2,249,424 + SMc01406 0.83 -0.1 2,249,424 + SMc01406 0.83 -0.0 2,249,424 + SMc01406 0.83 +1.2 2,249,424 + SMc01406 0.83 +1.0 2,249,425 - SMc01406 0.83 -0.9 2,249,425 - SMc01406 0.83 -0.7 2,249,425 - SMc01406 0.83 -0.1 2,249,475 - SMc01406 0.86 +0.9 2,249,603 + -0.0 2,249,603 + -0.4 2,249,693 + +0.1 2,249,738 + +0.2 2,250,780 - +0.3 2,250,883 - SMc01408 0.12 -0.1 2,250,896 + SMc01408 0.13 +1.0 2,251,025 + SMc01408 0.32 -0.4 2,251,026 - SMc01408 0.32 +0.7 2,251,055 + SMc01408 0.36 -0.3 2,251,068 + SMc01408 0.38 +2.1 2,251,068 + SMc01408 0.38 -0.2 2,251,068 + SMc01408 0.38 -0.0 2,251,069 - SMc01408 0.38 +0.5 2,251,069 - SMc01408 0.38 +1.5 2,251,069 - SMc01408 0.38 -0.3 2,251,069 - SMc01408 0.38 -0.6 2,251,069 - SMc01408 0.38 -1.0 2,251,069 - +2.2 2,251,074 + SMc01408 0.38 +0.1 2,251,074 + SMc01408 0.38 -2.3 2,251,074 + SMc01408 0.38 +0.0 2,251,074 + SMc01408 0.38 +0.8 2,251,074 + SMc01408 0.38 -0.4 2,251,075 - SMc01408 0.39 +0.3 2,251,075 - SMc01408 0.39 +0.3 2,251,075 - SMc01408 0.39 -1.1 2,251,075 - SMc01408 0.39 +0.3 2,251,075 - SMc01408 0.39 -0.1 2,251,076 + SMc01408 0.39 -0.4 2,251,076 + SMc01408 0.39 -0.1 2,251,076 + SMc01408 0.39 +0.5 2,251,076 + SMc01408 0.39 +0.4 2,251,076 + SMc01408 0.39 +0.1 2,251,076 + SMc01408 0.39 +0.3 2,251,077 - SMc01408 0.39 +0.6 2,251,077 - SMc01408 0.39 +0.6 2,251,251 + SMc01408 0.63 -0.7 2,251,251 + SMc01408 0.63 +0.0 2,251,251 + SMc01408 0.63 -0.0 2,251,252 - SMc01408 0.63 +0.3 2,251,284 + SMc01408 0.68 +1.2 2,251,284 + SMc01408 0.68 -0.5 2,251,285 - SMc01408 0.68 +0.1 2,251,285 - SMc01408 0.68 -2.8 2,251,285 - SMc01408 0.68 +0.5 2,251,285 - SMc01408 0.68 -0.4 2,251,285 - SMc01408 0.68 -0.7 2,251,494 + +1.3 2,251,496 + +1.7 2,251,497 - -0.0 2,251,497 - +0.1 2,251,497 - +0.1 2,251,547 - -1.7
Or see this region's nucleotide sequence