Strain Fitness in Sinorhizobium meliloti 1021 around SMc01407

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01406 and SMc01407 are separated by 186 nucleotidesSMc01407 and SMc01408 are separated by 194 nucleotides SMc01406: SMc01406 - transcriptional regulator, at 2,248,249 to 2,249,667 SMc01406 SMc01407: SMc01407 - pyridoxine 5'-phosphate synthase, at 2,249,854 to 2,250,606 SMc01407 SMc01408: SMc01408 - hypothetical protein, at 2,250,801 to 2,251,511 SMc01408 Position (kb) 2249 2250 2251Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2248.928 kb on + strand, within SMc01406at 2248.946 kb on + strand, within SMc01406at 2248.947 kb on - strandat 2249.025 kb on + strand, within SMc01406at 2249.025 kb on + strand, within SMc01406at 2249.025 kb on + strand, within SMc01406at 2249.025 kb on + strand, within SMc01406at 2249.026 kb on - strand, within SMc01406at 2249.054 kb on + strand, within SMc01406at 2249.055 kb on - strand, within SMc01406at 2249.058 kb on + strand, within SMc01406at 2249.058 kb on + strand, within SMc01406at 2249.058 kb on + strand, within SMc01406at 2249.058 kb on + strand, within SMc01406at 2249.058 kb on + strand, within SMc01406at 2249.059 kb on - strand, within SMc01406at 2249.059 kb on - strand, within SMc01406at 2249.059 kb on - strand, within SMc01406at 2249.137 kb on - strand, within SMc01406at 2249.235 kb on - strand, within SMc01406at 2249.392 kb on + strand, within SMc01406at 2249.393 kb on - strand, within SMc01406at 2249.393 kb on - strand, within SMc01406at 2249.420 kb on + strand, within SMc01406at 2249.420 kb on + strand, within SMc01406at 2249.421 kb on - strand, within SMc01406at 2249.421 kb on - strand, within SMc01406at 2249.421 kb on - strand, within SMc01406at 2249.421 kb on - strand, within SMc01406at 2249.421 kb on - strand, within SMc01406at 2249.424 kb on + strand, within SMc01406at 2249.424 kb on + strand, within SMc01406at 2249.424 kb on + strand, within SMc01406at 2249.424 kb on + strand, within SMc01406at 2249.425 kb on - strand, within SMc01406at 2249.425 kb on - strand, within SMc01406at 2249.425 kb on - strand, within SMc01406at 2249.475 kb on - strand, within SMc01406at 2249.603 kb on + strandat 2249.603 kb on + strandat 2249.693 kb on + strandat 2249.738 kb on + strandat 2250.780 kb on - strandat 2250.883 kb on - strand, within SMc01408at 2250.896 kb on + strand, within SMc01408at 2251.025 kb on + strand, within SMc01408at 2251.026 kb on - strand, within SMc01408at 2251.055 kb on + strand, within SMc01408at 2251.068 kb on + strand, within SMc01408at 2251.068 kb on + strand, within SMc01408at 2251.068 kb on + strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strandat 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.077 kb on - strand, within SMc01408at 2251.077 kb on - strand, within SMc01408at 2251.251 kb on + strand, within SMc01408at 2251.251 kb on + strand, within SMc01408at 2251.251 kb on + strand, within SMc01408at 2251.252 kb on - strand, within SMc01408at 2251.284 kb on + strand, within SMc01408at 2251.284 kb on + strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.494 kb on + strandat 2251.496 kb on + strandat 2251.497 kb on - strandat 2251.497 kb on - strandat 2251.497 kb on - strandat 2251.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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2,248,928 + SMc01406 0.48 -1.3
2,248,946 + SMc01406 0.49 +2.0
2,248,947 - +0.3
2,249,025 + SMc01406 0.55 -2.0
2,249,025 + SMc01406 0.55 -0.7
2,249,025 + SMc01406 0.55 +1.2
2,249,025 + SMc01406 0.55 -0.4
2,249,026 - SMc01406 0.55 +0.5
2,249,054 + SMc01406 0.57 -0.5
2,249,055 - SMc01406 0.57 +1.0
2,249,058 + SMc01406 0.57 +1.3
2,249,058 + SMc01406 0.57 +0.9
2,249,058 + SMc01406 0.57 +0.4
2,249,058 + SMc01406 0.57 -0.2
2,249,058 + SMc01406 0.57 -0.5
2,249,059 - SMc01406 0.57 -0.2
2,249,059 - SMc01406 0.57 +0.8
2,249,059 - SMc01406 0.57 -1.3
2,249,137 - SMc01406 0.63 +0.3
2,249,235 - SMc01406 0.69 -0.1
2,249,392 + SMc01406 0.81 +0.3
2,249,393 - SMc01406 0.81 -0.3
2,249,393 - SMc01406 0.81 +0.5
2,249,420 + SMc01406 0.83 -0.0
2,249,420 + SMc01406 0.83 +1.4
2,249,421 - SMc01406 0.83 +0.2
2,249,421 - SMc01406 0.83 +0.0
2,249,421 - SMc01406 0.83 -0.7
2,249,421 - SMc01406 0.83 +0.1
2,249,421 - SMc01406 0.83 -0.7
2,249,424 + SMc01406 0.83 -0.1
2,249,424 + SMc01406 0.83 -0.0
2,249,424 + SMc01406 0.83 +1.2
2,249,424 + SMc01406 0.83 +1.0
2,249,425 - SMc01406 0.83 -0.9
2,249,425 - SMc01406 0.83 -0.7
2,249,425 - SMc01406 0.83 -0.1
2,249,475 - SMc01406 0.86 +0.9
2,249,603 + -0.0
2,249,603 + -0.4
2,249,693 + +0.1
2,249,738 + +0.2
2,250,780 - +0.3
2,250,883 - SMc01408 0.12 -0.1
2,250,896 + SMc01408 0.13 +1.0
2,251,025 + SMc01408 0.32 -0.4
2,251,026 - SMc01408 0.32 +0.7
2,251,055 + SMc01408 0.36 -0.3
2,251,068 + SMc01408 0.38 +2.1
2,251,068 + SMc01408 0.38 -0.2
2,251,068 + SMc01408 0.38 -0.0
2,251,069 - SMc01408 0.38 +0.5
2,251,069 - SMc01408 0.38 +1.5
2,251,069 - SMc01408 0.38 -0.3
2,251,069 - SMc01408 0.38 -0.6
2,251,069 - SMc01408 0.38 -1.0
2,251,069 - +2.2
2,251,074 + SMc01408 0.38 +0.1
2,251,074 + SMc01408 0.38 -2.3
2,251,074 + SMc01408 0.38 +0.0
2,251,074 + SMc01408 0.38 +0.8
2,251,074 + SMc01408 0.38 -0.4
2,251,075 - SMc01408 0.39 +0.3
2,251,075 - SMc01408 0.39 +0.3
2,251,075 - SMc01408 0.39 -1.1
2,251,075 - SMc01408 0.39 +0.3
2,251,075 - SMc01408 0.39 -0.1
2,251,076 + SMc01408 0.39 -0.4
2,251,076 + SMc01408 0.39 -0.1
2,251,076 + SMc01408 0.39 +0.5
2,251,076 + SMc01408 0.39 +0.4
2,251,076 + SMc01408 0.39 +0.1
2,251,076 + SMc01408 0.39 +0.3
2,251,077 - SMc01408 0.39 +0.6
2,251,077 - SMc01408 0.39 +0.6
2,251,251 + SMc01408 0.63 -0.7
2,251,251 + SMc01408 0.63 +0.0
2,251,251 + SMc01408 0.63 -0.0
2,251,252 - SMc01408 0.63 +0.3
2,251,284 + SMc01408 0.68 +1.2
2,251,284 + SMc01408 0.68 -0.5
2,251,285 - SMc01408 0.68 +0.1
2,251,285 - SMc01408 0.68 -2.8
2,251,285 - SMc01408 0.68 +0.5
2,251,285 - SMc01408 0.68 -0.4
2,251,285 - SMc01408 0.68 -0.7
2,251,494 + +1.3
2,251,496 + +1.7
2,251,497 - -0.0
2,251,497 - +0.1
2,251,497 - +0.1
2,251,547 - -1.7

Or see this region's nucleotide sequence