Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01195 and SMc01194 are separated by 393 nucleotides SMc01194 and SMc01193 are separated by 1 nucleotides SMc01193 and SMc01192 are separated by 14 nucleotides
SMc01195: SMc01195 - hypothetical protein, at 1,735,136 to 1,735,546
SMc01195
SMc01194: SMc01194 - hypothetical protein, at 1,735,940 to 1,736,776
SMc01194
SMc01193: SMc01193 - hypothetical protein, at 1,736,778 to 1,737,557
SMc01193
SMc01192: SMc01192 - methionyl-tRNA synthetase, at 1,737,572 to 1,739,122
SMc01192
Position (kb)
1735
1736
1737 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1734.972 kb on + strand at 1734.973 kb on - strand at 1735.046 kb on + strand at 1735.046 kb on + strand at 1735.046 kb on + strand at 1735.046 kb on + strand at 1735.047 kb on - strand at 1735.047 kb on - strand at 1735.047 kb on - strand at 1735.047 kb on - strand at 1735.047 kb on - strand at 1735.064 kb on + strand at 1735.064 kb on + strand at 1735.102 kb on + strand at 1735.171 kb on - strand at 1735.171 kb on - strand at 1735.171 kb on - strand at 1735.533 kb on + strand at 1735.533 kb on + strand at 1735.534 kb on - strand at 1735.534 kb on - strand at 1735.608 kb on + strand at 1735.616 kb on + strand at 1735.616 kb on + strand at 1735.882 kb on - strand at 1735.995 kb on + strand at 1735.995 kb on + strand at 1735.995 kb on + strand at 1736.041 kb on - strand, within SMc01194 at 1736.059 kb on + strand, within SMc01194 at 1736.059 kb on + strand, within SMc01194 at 1736.059 kb on + strand, within SMc01194 at 1736.059 kb on + strand, within SMc01194 at 1736.145 kb on + strand, within SMc01194 at 1736.146 kb on - strand, within SMc01194 at 1736.146 kb on - strand, within SMc01194 at 1736.230 kb on - strand, within SMc01194 at 1736.355 kb on + strand, within SMc01194 at 1736.356 kb on - strand, within SMc01194 at 1736.356 kb on - strand, within SMc01194 at 1736.535 kb on + strand, within SMc01194 at 1736.536 kb on - strand, within SMc01194 at 1736.559 kb on - strand, within SMc01194 at 1736.645 kb on + strand, within SMc01194 at 1736.893 kb on + strand, within SMc01193 at 1736.893 kb on + strand, within SMc01193 at 1736.894 kb on - strand, within SMc01193 at 1737.043 kb on + strand, within SMc01193 at 1737.044 kb on - strand, within SMc01193 at 1737.044 kb on - strand, within SMc01193 at 1737.044 kb on - strand, within SMc01193 at 1737.044 kb on - strand, within SMc01193 at 1737.044 kb on - strand, within SMc01193 at 1737.152 kb on + strand, within SMc01193 at 1737.173 kb on + strand, within SMc01193 at 1737.173 kb on + strand, within SMc01193 at 1737.173 kb on + strand, within SMc01193 at 1737.173 kb on + strand, within SMc01193 at 1737.173 kb on + strand, within SMc01193 at 1737.173 kb on + strand, within SMc01193 at 1737.174 kb on - strand, within SMc01193 at 1737.174 kb on - strand, within SMc01193 at 1737.174 kb on - strand, within SMc01193 at 1737.177 kb on + strand, within SMc01193 at 1737.177 kb on + strand, within SMc01193 at 1737.177 kb on + strand, within SMc01193 at 1737.177 kb on + strand, within SMc01193 at 1737.178 kb on - strand, within SMc01193 at 1737.178 kb on - strand, within SMc01193 at 1737.178 kb on - strand, within SMc01193 at 1737.215 kb on + strand, within SMc01193 at 1737.452 kb on + strand, within SMc01193
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,734,972 + +1.8 1,734,973 - -0.3 1,735,046 + +0.9 1,735,046 + -1.5 1,735,046 + +0.1 1,735,046 + -0.4 1,735,047 - +0.2 1,735,047 - -0.5 1,735,047 - +0.4 1,735,047 - +0.8 1,735,047 - -1.8 1,735,064 + +1.6 1,735,064 + -1.4 1,735,102 + +0.4 1,735,171 - +0.5 1,735,171 - +0.8 1,735,171 - -1.5 1,735,533 + -0.8 1,735,533 + +0.4 1,735,534 - +0.7 1,735,534 - -0.4 1,735,608 + -0.6 1,735,616 + -0.4 1,735,616 + -0.6 1,735,882 - +0.3 1,735,995 + +0.6 1,735,995 + -1.2 1,735,995 + -0.8 1,736,041 - SMc01194 0.12 -0.4 1,736,059 + SMc01194 0.14 -0.2 1,736,059 + SMc01194 0.14 -1.1 1,736,059 + SMc01194 0.14 +1.1 1,736,059 + SMc01194 0.14 +0.2 1,736,145 + SMc01194 0.24 +0.1 1,736,146 - SMc01194 0.25 +0.6 1,736,146 - SMc01194 0.25 +0.2 1,736,230 - SMc01194 0.35 +0.4 1,736,355 + SMc01194 0.50 +0.6 1,736,356 - SMc01194 0.50 -0.2 1,736,356 - SMc01194 0.50 +2.2 1,736,535 + SMc01194 0.71 -2.6 1,736,536 - SMc01194 0.71 -1.3 1,736,559 - SMc01194 0.74 +0.6 1,736,645 + SMc01194 0.84 -0.4 1,736,893 + SMc01193 0.15 +1.4 1,736,893 + SMc01193 0.15 +0.6 1,736,894 - SMc01193 0.15 +1.5 1,737,043 + SMc01193 0.34 +1.6 1,737,044 - SMc01193 0.34 +1.6 1,737,044 - SMc01193 0.34 +1.0 1,737,044 - SMc01193 0.34 +2.3 1,737,044 - SMc01193 0.34 +1.3 1,737,044 - SMc01193 0.34 +1.0 1,737,152 + SMc01193 0.48 +1.6 1,737,173 + SMc01193 0.51 -0.9 1,737,173 + SMc01193 0.51 +2.6 1,737,173 + SMc01193 0.51 +0.2 1,737,173 + SMc01193 0.51 +3.5 1,737,173 + SMc01193 0.51 +1.6 1,737,173 + SMc01193 0.51 +1.2 1,737,174 - SMc01193 0.51 +2.1 1,737,174 - SMc01193 0.51 +0.9 1,737,174 - SMc01193 0.51 +1.6 1,737,177 + SMc01193 0.51 +1.4 1,737,177 + SMc01193 0.51 +1.7 1,737,177 + SMc01193 0.51 +1.6 1,737,177 + SMc01193 0.51 +0.6 1,737,178 - SMc01193 0.51 +0.9 1,737,178 - SMc01193 0.51 +0.5 1,737,178 - SMc01193 0.51 +0.2 1,737,215 + SMc01193 0.56 +2.2 1,737,452 + SMc01193 0.86 +1.7
Or see this region's nucleotide sequence