Strain Fitness in Sinorhizobium meliloti 1021 around SMc01189

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01190 and SMc01189 overlap by 4 nucleotidesSMc01189 and SMc01188 are separated by 57 nucleotides SMc01190: SMc01190 - DNA polymerase III subunit delta', at 1,739,754 to 1,740,785 SMc01190 SMc01189: SMc01189 - thymidylate kinase, at 1,740,782 to 1,741,486 SMc01189 SMc01188: SMc01188 - penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein, at 1,741,544 to 1,742,698 SMc01188 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -1 0 1at 1740.728 kb on - strandat 1740.834 kb on - strandat 1741.488 kb on - strandat 1741.488 kb on - strandat 1741.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,740,728 - +0.1
1,740,834 - -0.9
1,741,488 - +0.8
1,741,488 - +0.8
1,741,488 - -0.3

Or see this region's nucleotide sequence