Strain Fitness in Sinorhizobium meliloti 1021 around SMc01138

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01139 and SMc01138 are separated by 175 nucleotidesSMc01138 and SMc01137 are separated by 13 nucleotidesSMc01137 and SMc01136 are separated by 31 nucleotides SMc01139: SMc01139 - RNA polymerase factor sigma-54, at 411,264 to 412,808 SMc01139 SMc01138: SMc01138 - ABC transporter ATP-binding protein, at 412,984 to 413,796 SMc01138 SMc01137: SMc01137 - hypothetical protein, at 413,810 to 414,370 SMc01137 SMc01136: SMc01136 - hypothetical protein, at 414,402 to 415,070 SMc01136 Position (kb) 412 413 414Strain fitness (log2 ratio) -1 0 1at 412.289 kb on - strand, within SMc01139at 412.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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412,289 - SMc01139 0.66 +0.3
412,870 + +0.7

Or see this region's nucleotide sequence