Strain Fitness in Sinorhizobium meliloti 1021 around SMc00642

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00643 and SMc00642 are separated by 204 nucleotidesSMc00642 and SMc00641 are separated by 136 nucleotides SMc00643: SMc00643 - adenylosuccinate synthetase, at 2,932,696 to 2,933,994 SMc00643 SMc00642: SMc00642 - hypothetical protein, at 2,934,199 to 2,935,089 SMc00642 SMc00641: SMc00641 - D-3-phosphoglycerate dehydrogenase, at 2,935,226 to 2,936,821 SMc00641 Position (kb) 2934 2935 2936Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2934.055 kb on - strandat 2934.057 kb on - strandat 2934.130 kb on + strandat 2934.139 kb on + strandat 2934.214 kb on + strandat 2934.214 kb on + strandat 2934.228 kb on + strandat 2934.691 kb on + strand, within SMc00642at 2934.691 kb on + strand, within SMc00642at 2934.691 kb on + strand, within SMc00642at 2934.702 kb on + strand, within SMc00642at 2934.702 kb on + strand, within SMc00642at 2934.702 kb on + strand, within SMc00642at 2934.702 kb on + strand, within SMc00642at 2934.702 kb on + strand, within SMc00642at 2934.702 kb on + strand, within SMc00642at 2934.703 kb on - strand, within SMc00642at 2934.705 kb on - strand, within SMc00642at 2934.859 kb on + strand, within SMc00642at 2934.860 kb on - strand, within SMc00642at 2934.898 kb on + strand, within SMc00642at 2934.899 kb on - strand, within SMc00642at 2934.899 kb on - strand, within SMc00642at 2934.899 kb on - strand, within SMc00642at 2935.001 kb on + strandat 2935.002 kb on - strandat 2935.092 kb on + strandat 2935.092 kb on + strandat 2935.092 kb on + strandat 2935.093 kb on - strandat 2935.093 kb on - strandat 2935.136 kb on + strandat 2935.139 kb on + strandat 2935.139 kb on + strandat 2935.140 kb on - strandat 2935.449 kb on + strand, within SMc00641at 2935.449 kb on + strand, within SMc00641at 2935.450 kb on - strand, within SMc00641at 2935.532 kb on - strand, within SMc00641at 2935.565 kb on + strand, within SMc00641at 2935.581 kb on + strand, within SMc00641at 2935.582 kb on - strand, within SMc00641at 2935.755 kb on + strand, within SMc00641at 2935.756 kb on - strand, within SMc00641at 2935.841 kb on + strand, within SMc00641at 2935.841 kb on + strand, within SMc00641at 2935.841 kb on + strand, within SMc00641at 2935.911 kb on + strand, within SMc00641at 2935.912 kb on - strand, within SMc00641

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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2,934,055 - +1.0
2,934,057 - +1.8
2,934,130 + +2.1
2,934,139 + +2.7
2,934,214 + +0.2
2,934,214 + +1.0
2,934,228 + -1.4
2,934,691 + SMc00642 0.55 +0.2
2,934,691 + SMc00642 0.55 -0.2
2,934,691 + SMc00642 0.55 +0.3
2,934,702 + SMc00642 0.56 +0.7
2,934,702 + SMc00642 0.56 +0.2
2,934,702 + SMc00642 0.56 +3.9
2,934,702 + SMc00642 0.56 +0.1
2,934,702 + SMc00642 0.56 +0.5
2,934,702 + SMc00642 0.56 +0.1
2,934,703 - SMc00642 0.57 -0.6
2,934,705 - SMc00642 0.57 -2.6
2,934,859 + SMc00642 0.74 -0.2
2,934,860 - SMc00642 0.74 -0.0
2,934,898 + SMc00642 0.78 -1.2
2,934,899 - SMc00642 0.79 -0.1
2,934,899 - SMc00642 0.79 -0.1
2,934,899 - SMc00642 0.79 +1.9
2,935,001 + +0.1
2,935,002 - +0.0
2,935,092 + -1.1
2,935,092 + -0.2
2,935,092 + -0.7
2,935,093 - +0.3
2,935,093 - +0.7
2,935,136 + -0.3
2,935,139 + +0.3
2,935,139 + -1.0
2,935,140 - +0.1
2,935,449 + SMc00641 0.14 -0.6
2,935,449 + SMc00641 0.14 -0.6
2,935,450 - SMc00641 0.14 +1.5
2,935,532 - SMc00641 0.19 -0.9
2,935,565 + SMc00641 0.21 +1.3
2,935,581 + SMc00641 0.22 +1.1
2,935,582 - SMc00641 0.22 -0.7
2,935,755 + SMc00641 0.33 -1.1
2,935,756 - SMc00641 0.33 -0.4
2,935,841 + SMc00641 0.39 -2.1
2,935,841 + SMc00641 0.39 +0.3
2,935,841 + SMc00641 0.39 -0.4
2,935,911 + SMc00641 0.43 +2.6
2,935,912 - SMc00641 0.43 -0.1

Or see this region's nucleotide sequence