Strain Fitness in Sinorhizobium meliloti 1021 around SMc00640

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00641 and SMc00640 are separated by 81 nucleotidesSMc00640 and SMc00639 are separated by 137 nucleotides SMc00641: SMc00641 - D-3-phosphoglycerate dehydrogenase, at 2,935,226 to 2,936,821 SMc00641 SMc00640: SMc00640 - phosphoserine aminotransferase, at 2,936,903 to 2,938,081 SMc00640 SMc00639: SMc00639 - heat resistant agglutinin 1 signal peptide protein, at 2,938,219 to 2,938,992 SMc00639 Position (kb) 2936 2937 2938 2939Strain fitness (log2 ratio) -1 0 1 2 3at 2935.911 kb on + strand, within SMc00641at 2935.912 kb on - strand, within SMc00641at 2936.138 kb on - strand, within SMc00641at 2936.307 kb on + strand, within SMc00641at 2936.307 kb on + strand, within SMc00641at 2936.685 kb on + strandat 2936.802 kb on - strandat 2936.802 kb on - strandat 2937.163 kb on + strand, within SMc00640at 2937.163 kb on + strand, within SMc00640at 2937.310 kb on + strand, within SMc00640at 2937.311 kb on - strand, within SMc00640at 2937.312 kb on + strand, within SMc00640at 2937.312 kb on + strand, within SMc00640at 2937.313 kb on - strand, within SMc00640at 2937.341 kb on - strand, within SMc00640at 2937.365 kb on - strand, within SMc00640at 2937.365 kb on - strand, within SMc00640at 2937.365 kb on - strand, within SMc00640at 2937.429 kb on + strand, within SMc00640at 2937.429 kb on + strand, within SMc00640at 2937.429 kb on + strand, within SMc00640at 2937.430 kb on - strand, within SMc00640at 2937.430 kb on - strand, within SMc00640at 2937.430 kb on - strand, within SMc00640at 2937.430 kb on - strand, within SMc00640at 2937.729 kb on - strand, within SMc00640at 2937.913 kb on + strand, within SMc00640at 2938.042 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.081 kb on + strandat 2938.082 kb on - strandat 2938.082 kb on - strandat 2938.082 kb on - strandat 2938.086 kb on + strandat 2938.086 kb on + strandat 2938.086 kb on + strandat 2938.098 kb on + strandat 2938.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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2,935,911 + SMc00641 0.43 +2.6
2,935,912 - SMc00641 0.43 -0.1
2,936,138 - SMc00641 0.57 -1.0
2,936,307 + SMc00641 0.68 -1.0
2,936,307 + SMc00641 0.68 +0.2
2,936,685 + -1.3
2,936,802 - -0.2
2,936,802 - +0.1
2,937,163 + SMc00640 0.22 +0.7
2,937,163 + SMc00640 0.22 +0.4
2,937,310 + SMc00640 0.35 +0.0
2,937,311 - SMc00640 0.35 +0.2
2,937,312 + SMc00640 0.35 +0.3
2,937,312 + SMc00640 0.35 +0.2
2,937,313 - SMc00640 0.35 +0.8
2,937,341 - SMc00640 0.37 -1.0
2,937,365 - SMc00640 0.39 -1.1
2,937,365 - SMc00640 0.39 -0.1
2,937,365 - SMc00640 0.39 +0.3
2,937,429 + SMc00640 0.45 +0.4
2,937,429 + SMc00640 0.45 +0.6
2,937,429 + SMc00640 0.45 +0.3
2,937,430 - SMc00640 0.45 +0.1
2,937,430 - SMc00640 0.45 +1.4
2,937,430 - SMc00640 0.45 -0.2
2,937,430 - SMc00640 0.45 +0.3
2,937,729 - SMc00640 0.70 -0.1
2,937,913 + SMc00640 0.86 -0.9
2,938,042 + -1.2
2,938,081 + +0.6
2,938,081 + +0.3
2,938,081 + -0.5
2,938,081 + +0.3
2,938,081 + -1.3
2,938,081 + -0.6
2,938,081 + +0.2
2,938,081 + -0.4
2,938,081 + +0.3
2,938,082 - -1.3
2,938,082 - +0.3
2,938,082 - +0.4
2,938,086 + +0.3
2,938,086 + -0.9
2,938,086 + -0.3
2,938,098 + -0.6
2,938,098 + +3.1

Or see this region's nucleotide sequence