Strain Fitness in Sinorhizobium meliloti 1021 around SMc00617

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00616 and SMc00617 are separated by 55 nucleotidesSMc00617 and SMc00618 are separated by 64 nucleotides SMc00616: SMc00616 - permease, at 1,288,190 to 1,289,305 SMc00616 SMc00617: SMc00617 - hypothetical protein, at 1,289,361 to 1,290,050 SMc00617 SMc00618: SMc00618 - polyphosphate kinase, at 1,290,115 to 1,292,325 SMc00618 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -1 0 1 2 3at 1288.493 kb on + strand, within SMc00616at 1288.493 kb on + strand, within SMc00616at 1288.612 kb on + strand, within SMc00616at 1288.612 kb on + strand, within SMc00616at 1288.613 kb on - strand, within SMc00616at 1288.709 kb on + strand, within SMc00616at 1288.709 kb on + strand, within SMc00616at 1288.709 kb on + strand, within SMc00616at 1288.709 kb on + strand, within SMc00616at 1288.709 kb on + strand, within SMc00616at 1288.710 kb on - strand, within SMc00616at 1288.710 kb on - strand, within SMc00616at 1288.733 kb on - strand, within SMc00616at 1288.733 kb on - strand, within SMc00616at 1288.733 kb on - strand, within SMc00616at 1288.733 kb on - strand, within SMc00616at 1288.733 kb on - strand, within SMc00616at 1288.770 kb on - strand, within SMc00616at 1288.808 kb on - strand, within SMc00616at 1288.865 kb on + strand, within SMc00616at 1288.865 kb on + strand, within SMc00616at 1288.866 kb on - strand, within SMc00616at 1288.949 kb on + strand, within SMc00616at 1288.949 kb on + strand, within SMc00616at 1288.949 kb on + strand, within SMc00616at 1288.949 kb on + strand, within SMc00616at 1289.015 kb on + strand, within SMc00616at 1289.016 kb on - strand, within SMc00616at 1289.016 kb on - strand, within SMc00616at 1289.255 kb on + strandat 1289.266 kb on + strandat 1289.328 kb on + strandat 1290.032 kb on + strandat 1290.032 kb on + strandat 1290.080 kb on - strandat 1290.505 kb on + strand, within SMc00618at 1290.505 kb on + strand, within SMc00618at 1290.506 kb on - strand, within SMc00618at 1290.522 kb on + strand, within SMc00618at 1290.523 kb on - strand, within SMc00618at 1290.785 kb on - strand, within SMc00618at 1290.785 kb on - strand, within SMc00618at 1290.785 kb on - strand, within SMc00618at 1290.785 kb on - strand, within SMc00618at 1290.838 kb on + strand, within SMc00618

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,288,493 + SMc00616 0.27 +0.5
1,288,493 + SMc00616 0.27 -0.3
1,288,612 + SMc00616 0.38 -0.7
1,288,612 + SMc00616 0.38 +0.4
1,288,613 - SMc00616 0.38 +0.1
1,288,709 + SMc00616 0.47 -0.5
1,288,709 + SMc00616 0.47 -1.4
1,288,709 + SMc00616 0.47 +1.7
1,288,709 + SMc00616 0.47 -0.0
1,288,709 + SMc00616 0.47 +0.0
1,288,710 - SMc00616 0.47 +3.1
1,288,710 - SMc00616 0.47 +0.7
1,288,733 - SMc00616 0.49 -0.4
1,288,733 - SMc00616 0.49 +0.2
1,288,733 - SMc00616 0.49 -0.1
1,288,733 - SMc00616 0.49 +0.1
1,288,733 - SMc00616 0.49 -0.4
1,288,770 - SMc00616 0.52 -1.2
1,288,808 - SMc00616 0.55 +0.2
1,288,865 + SMc00616 0.60 +0.5
1,288,865 + SMc00616 0.60 -0.5
1,288,866 - SMc00616 0.61 -0.6
1,288,949 + SMc00616 0.68 -0.1
1,288,949 + SMc00616 0.68 +0.8
1,288,949 + SMc00616 0.68 -0.1
1,288,949 + SMc00616 0.68 -0.5
1,289,015 + SMc00616 0.74 +0.1
1,289,016 - SMc00616 0.74 +0.5
1,289,016 - SMc00616 0.74 +0.6
1,289,255 + -0.9
1,289,266 + +0.6
1,289,328 + +0.7
1,290,032 + -0.3
1,290,032 + +0.1
1,290,080 - +0.9
1,290,505 + SMc00618 0.18 +1.5
1,290,505 + SMc00618 0.18 +1.0
1,290,506 - SMc00618 0.18 +0.7
1,290,522 + SMc00618 0.18 +0.1
1,290,523 - SMc00618 0.18 +0.4
1,290,785 - SMc00618 0.30 +1.3
1,290,785 - SMc00618 0.30 +0.3
1,290,785 - SMc00618 0.30 +1.5
1,290,785 - SMc00618 0.30 +1.0
1,290,838 + SMc00618 0.33 +0.6

Or see this region's nucleotide sequence