Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00613 and SMc00614 are separated by 9 nucleotides SMc00614 and SMc00615 overlap by 4 nucleotides SMc00615 and SMc00616 are separated by 245 nucleotides
SMc00613: SMc00613 - hypothetical protein, at 1,285,621 to 1,286,205
SMc00613
SMc00614: SMc00614 - phosphoribosylglycinamide formyltransferase, at 1,286,215 to 1,286,877
SMc00614
SMc00615: SMc00615 - phosphoribosylaminoimidazole synthetase, at 1,286,874 to 1,287,944
SMc00615
SMc00616: SMc00616 - permease, at 1,288,190 to 1,289,305
SMc00616
Position (kb)
1286
1287
1288 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1285.943 kb on - strand, within SMc00613 at 1286.047 kb on + strand, within SMc00613 at 1286.047 kb on + strand, within SMc00613 at 1286.048 kb on - strand, within SMc00613 at 1286.239 kb on - strand at 1286.266 kb on + strand at 1286.558 kb on + strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.593 kb on - strand, within SMc00614 at 1286.594 kb on + strand, within SMc00614 at 1286.594 kb on + strand, within SMc00614 at 1286.594 kb on + strand, within SMc00614 at 1286.595 kb on - strand, within SMc00614 at 1286.595 kb on - strand, within SMc00614 at 1286.896 kb on + strand at 1286.896 kb on + strand at 1286.896 kb on + strand at 1287.247 kb on + strand, within SMc00615 at 1287.247 kb on + strand, within SMc00615 at 1287.247 kb on + strand, within SMc00615 at 1287.248 kb on - strand, within SMc00615 at 1287.248 kb on - strand, within SMc00615 at 1287.356 kb on - strand, within SMc00615 at 1287.356 kb on - strand, within SMc00615 at 1287.475 kb on + strand, within SMc00615 at 1287.490 kb on + strand, within SMc00615 at 1287.490 kb on + strand, within SMc00615 at 1287.490 kb on + strand, within SMc00615 at 1287.491 kb on - strand, within SMc00615 at 1287.491 kb on - strand, within SMc00615 at 1287.613 kb on + strand, within SMc00615 at 1287.613 kb on + strand, within SMc00615 at 1287.614 kb on - strand, within SMc00615 at 1288.131 kb on + strand at 1288.132 kb on - strand at 1288.132 kb on - strand at 1288.325 kb on + strand, within SMc00616 at 1288.493 kb on + strand, within SMc00616 at 1288.493 kb on + strand, within SMc00616 at 1288.612 kb on + strand, within SMc00616 at 1288.612 kb on + strand, within SMc00616 at 1288.613 kb on - strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.709 kb on + strand, within SMc00616 at 1288.710 kb on - strand, within SMc00616 at 1288.710 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.733 kb on - strand, within SMc00616 at 1288.770 kb on - strand, within SMc00616 at 1288.808 kb on - strand, within SMc00616 at 1288.865 kb on + strand, within SMc00616 at 1288.865 kb on + strand, within SMc00616 at 1288.866 kb on - strand, within SMc00616
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,285,943 - SMc00613 0.55 -1.1 1,286,047 + SMc00613 0.73 -0.0 1,286,047 + SMc00613 0.73 +0.3 1,286,048 - SMc00613 0.73 -0.6 1,286,239 - -0.9 1,286,266 + -0.2 1,286,558 + SMc00614 0.52 +0.3 1,286,593 - SMc00614 0.57 -1.0 1,286,593 - SMc00614 0.57 +0.3 1,286,593 - SMc00614 0.57 +1.3 1,286,593 - SMc00614 0.57 -0.2 1,286,594 + SMc00614 0.57 +0.9 1,286,594 + SMc00614 0.57 -1.7 1,286,594 + SMc00614 0.57 +0.5 1,286,595 - SMc00614 0.57 -1.2 1,286,595 - SMc00614 0.57 +0.3 1,286,896 + +1.0 1,286,896 + +0.6 1,286,896 + +0.9 1,287,247 + SMc00615 0.35 -2.5 1,287,247 + SMc00615 0.35 -1.4 1,287,247 + SMc00615 0.35 -0.0 1,287,248 - SMc00615 0.35 +0.4 1,287,248 - SMc00615 0.35 +0.1 1,287,356 - SMc00615 0.45 +1.0 1,287,356 - SMc00615 0.45 -1.2 1,287,475 + SMc00615 0.56 +0.3 1,287,490 + SMc00615 0.58 +1.1 1,287,490 + SMc00615 0.58 +0.8 1,287,490 + SMc00615 0.58 -0.7 1,287,491 - SMc00615 0.58 +0.1 1,287,491 - SMc00615 0.58 -0.3 1,287,613 + SMc00615 0.69 +0.0 1,287,613 + SMc00615 0.69 +1.2 1,287,614 - SMc00615 0.69 -1.6 1,288,131 + -1.1 1,288,132 - -0.2 1,288,132 - +0.3 1,288,325 + SMc00616 0.12 -0.4 1,288,493 + SMc00616 0.27 +0.5 1,288,493 + SMc00616 0.27 -0.3 1,288,612 + SMc00616 0.38 -0.7 1,288,612 + SMc00616 0.38 +0.4 1,288,613 - SMc00616 0.38 +0.1 1,288,709 + SMc00616 0.47 -0.5 1,288,709 + SMc00616 0.47 -1.4 1,288,709 + SMc00616 0.47 +1.7 1,288,709 + SMc00616 0.47 -0.0 1,288,709 + SMc00616 0.47 +0.0 1,288,710 - SMc00616 0.47 +3.1 1,288,710 - SMc00616 0.47 +0.7 1,288,733 - SMc00616 0.49 -0.4 1,288,733 - SMc00616 0.49 +0.2 1,288,733 - SMc00616 0.49 -0.1 1,288,733 - SMc00616 0.49 +0.1 1,288,733 - SMc00616 0.49 -0.4 1,288,770 - SMc00616 0.52 -1.2 1,288,808 - SMc00616 0.55 +0.2 1,288,865 + SMc00616 0.60 +0.5 1,288,865 + SMc00616 0.60 -0.5 1,288,866 - SMc00616 0.61 -0.6
Or see this region's nucleotide sequence