Strain Fitness in Sinorhizobium meliloti 1021 around SMc00595

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00593 and SMc00594 are separated by 135 nucleotidesSMc00594 and SMc00595 are separated by 102 nucleotidesSMc00595 and SMc00596 are separated by 52 nucleotidesSMc00596 and SMc00597 overlap by 4 nucleotides SMc00593: SMc00593 - hypothetical protein, at 1,266,686 to 1,267,198 SMc00593 SMc00594: SMc00594 - beta-etherase (BETA-aryl ether cleaving enzyme) protein, at 1,267,334 to 1,268,023 SMc00594 SMc00595: SMc00595 - nucleoside diphosphate kinase, at 1,268,126 to 1,268,548 SMc00595 SMc00596: SMc00596 - hypothetical protein, at 1,268,601 to 1,269,104 SMc00596 SMc00597: SMc00597 - hypothetical protein, at 1,269,101 to 1,269,661 SMc00597 Position (kb) 1268 1269Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1267.227 kb on + strandat 1267.301 kb on + strandat 1267.301 kb on + strandat 1267.301 kb on + strandat 1267.302 kb on - strandat 1267.302 kb on - strandat 1267.302 kb on - strandat 1267.556 kb on + strand, within SMc00594at 1267.556 kb on + strand, within SMc00594at 1267.557 kb on - strand, within SMc00594at 1267.557 kb on - strand, within SMc00594at 1267.571 kb on + strand, within SMc00594at 1267.721 kb on + strand, within SMc00594at 1267.722 kb on - strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.884 kb on - strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.886 kb on - strand, within SMc00594at 1267.886 kb on - strand, within SMc00594at 1268.547 kb on - strandat 1268.603 kb on - strandat 1268.797 kb on + strand, within SMc00596at 1268.798 kb on - strand, within SMc00596at 1268.798 kb on - strand, within SMc00596at 1268.798 kb on - strand, within SMc00596at 1268.969 kb on + strand, within SMc00596at 1268.969 kb on + strand, within SMc00596at 1268.969 kb on + strand, within SMc00596at 1268.971 kb on + strand, within SMc00596at 1268.971 kb on + strand, within SMc00596at 1268.971 kb on + strand, within SMc00596at 1268.972 kb on - strand, within SMc00596at 1268.972 kb on - strand, within SMc00596at 1268.972 kb on - strand, within SMc00596at 1268.980 kb on + strand, within SMc00596at 1268.981 kb on - strand, within SMc00596at 1268.992 kb on + strand, within SMc00596at 1268.993 kb on - strand, within SMc00596at 1269.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,267,227 + +0.4
1,267,301 + -0.8
1,267,301 + -1.3
1,267,301 + +1.4
1,267,302 - -0.9
1,267,302 - -0.3
1,267,302 - -1.3
1,267,556 + SMc00594 0.32 -0.7
1,267,556 + SMc00594 0.32 +0.5
1,267,557 - SMc00594 0.32 -0.6
1,267,557 - SMc00594 0.32 -1.2
1,267,571 + SMc00594 0.34 -0.5
1,267,721 + SMc00594 0.56 -0.9
1,267,722 - SMc00594 0.56 -3.0
1,267,883 + SMc00594 0.80 -1.1
1,267,883 + SMc00594 0.80 -0.7
1,267,883 + SMc00594 0.80 +0.7
1,267,883 + SMc00594 0.80 -0.9
1,267,884 - SMc00594 0.80 +1.9
1,267,885 + SMc00594 0.80 -2.3
1,267,885 + SMc00594 0.80 +0.3
1,267,885 + SMc00594 0.80 +0.0
1,267,885 + SMc00594 0.80 -1.3
1,267,886 - SMc00594 0.80 +0.2
1,267,886 - SMc00594 0.80 +2.4
1,268,547 - +0.0
1,268,603 - -1.0
1,268,797 + SMc00596 0.39 +0.1
1,268,798 - SMc00596 0.39 -0.1
1,268,798 - SMc00596 0.39 +1.7
1,268,798 - SMc00596 0.39 +0.2
1,268,969 + SMc00596 0.73 -0.7
1,268,969 + SMc00596 0.73 +0.6
1,268,969 + SMc00596 0.73 +0.9
1,268,971 + SMc00596 0.73 +1.7
1,268,971 + SMc00596 0.73 +1.8
1,268,971 + SMc00596 0.73 -0.8
1,268,972 - SMc00596 0.74 -0.0
1,268,972 - SMc00596 0.74 -0.5
1,268,972 - SMc00596 0.74 -0.2
1,268,980 + SMc00596 0.75 +1.8
1,268,981 - SMc00596 0.75 +2.0
1,268,992 + SMc00596 0.78 -2.5
1,268,993 - SMc00596 0.78 +0.2
1,269,088 - -0.5

Or see this region's nucleotide sequence