Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00593 and SMc00594 are separated by 135 nucleotides SMc00594 and SMc00595 are separated by 102 nucleotides SMc00595 and SMc00596 are separated by 52 nucleotides SMc00596 and SMc00597 overlap by 4 nucleotides
SMc00593: SMc00593 - hypothetical protein, at 1,266,686 to 1,267,198
SMc00593
SMc00594: SMc00594 - beta-etherase (BETA-aryl ether cleaving enzyme) protein, at 1,267,334 to 1,268,023
SMc00594
SMc00595: SMc00595 - nucleoside diphosphate kinase, at 1,268,126 to 1,268,548
SMc00595
SMc00596: SMc00596 - hypothetical protein, at 1,268,601 to 1,269,104
SMc00596
SMc00597: SMc00597 - hypothetical protein, at 1,269,101 to 1,269,661
SMc00597
Position (kb)
1268
1269 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1267.227 kb on + strand at 1267.301 kb on + strand at 1267.301 kb on + strand at 1267.301 kb on + strand at 1267.302 kb on - strand at 1267.302 kb on - strand at 1267.302 kb on - strand at 1267.556 kb on + strand, within SMc00594 at 1267.556 kb on + strand, within SMc00594 at 1267.557 kb on - strand, within SMc00594 at 1267.557 kb on - strand, within SMc00594 at 1267.571 kb on + strand, within SMc00594 at 1267.721 kb on + strand, within SMc00594 at 1267.722 kb on - strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.884 kb on - strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.886 kb on - strand, within SMc00594 at 1267.886 kb on - strand, within SMc00594 at 1268.547 kb on - strand at 1268.603 kb on - strand at 1268.797 kb on + strand, within SMc00596 at 1268.798 kb on - strand, within SMc00596 at 1268.798 kb on - strand, within SMc00596 at 1268.798 kb on - strand, within SMc00596 at 1268.969 kb on + strand, within SMc00596 at 1268.969 kb on + strand, within SMc00596 at 1268.969 kb on + strand, within SMc00596 at 1268.971 kb on + strand, within SMc00596 at 1268.971 kb on + strand, within SMc00596 at 1268.971 kb on + strand, within SMc00596 at 1268.972 kb on - strand, within SMc00596 at 1268.972 kb on - strand, within SMc00596 at 1268.972 kb on - strand, within SMc00596 at 1268.980 kb on + strand, within SMc00596 at 1268.981 kb on - strand, within SMc00596 at 1268.992 kb on + strand, within SMc00596 at 1268.993 kb on - strand, within SMc00596 at 1269.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,267,227 + +0.4 1,267,301 + -0.8 1,267,301 + -1.3 1,267,301 + +1.4 1,267,302 - -0.9 1,267,302 - -0.3 1,267,302 - -1.3 1,267,556 + SMc00594 0.32 -0.7 1,267,556 + SMc00594 0.32 +0.5 1,267,557 - SMc00594 0.32 -0.6 1,267,557 - SMc00594 0.32 -1.2 1,267,571 + SMc00594 0.34 -0.5 1,267,721 + SMc00594 0.56 -0.9 1,267,722 - SMc00594 0.56 -3.0 1,267,883 + SMc00594 0.80 -1.1 1,267,883 + SMc00594 0.80 -0.7 1,267,883 + SMc00594 0.80 +0.7 1,267,883 + SMc00594 0.80 -0.9 1,267,884 - SMc00594 0.80 +1.9 1,267,885 + SMc00594 0.80 -2.3 1,267,885 + SMc00594 0.80 +0.3 1,267,885 + SMc00594 0.80 +0.0 1,267,885 + SMc00594 0.80 -1.3 1,267,886 - SMc00594 0.80 +0.2 1,267,886 - SMc00594 0.80 +2.4 1,268,547 - +0.0 1,268,603 - -1.0 1,268,797 + SMc00596 0.39 +0.1 1,268,798 - SMc00596 0.39 -0.1 1,268,798 - SMc00596 0.39 +1.7 1,268,798 - SMc00596 0.39 +0.2 1,268,969 + SMc00596 0.73 -0.7 1,268,969 + SMc00596 0.73 +0.6 1,268,969 + SMc00596 0.73 +0.9 1,268,971 + SMc00596 0.73 +1.7 1,268,971 + SMc00596 0.73 +1.8 1,268,971 + SMc00596 0.73 -0.8 1,268,972 - SMc00596 0.74 -0.0 1,268,972 - SMc00596 0.74 -0.5 1,268,972 - SMc00596 0.74 -0.2 1,268,980 + SMc00596 0.75 +1.8 1,268,981 - SMc00596 0.75 +2.0 1,268,992 + SMc00596 0.78 -2.5 1,268,993 - SMc00596 0.78 +0.2 1,269,088 - -0.5
Or see this region's nucleotide sequence