Strain Fitness in Sinorhizobium meliloti 1021 around SMc00554

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00553 and SMc00554 are separated by 11 nucleotidesSMc00554 and SMc00555 are separated by 146 nucleotidesSMc00555 and SMc00556 are separated by 68 nucleotides SMc00553: SMc00553 - oxidoreductase, at 1,222,911 to 1,223,651 SMc00553 SMc00554: SMc00554 - amidophosphoribosyltransferase, at 1,223,663 to 1,225,153 SMc00554 SMc00555: SMc00555 - colicin V production transmembrane protein, at 1,225,300 to 1,225,899 SMc00555 SMc00556: SMc00556 - DNA repair protein RadA, at 1,225,968 to 1,227,431 SMc00556 Position (kb) 1223 1224 1225 1226Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1222.750 kb on + strandat 1222.750 kb on + strandat 1222.913 kb on - strandat 1223.590 kb on + strandat 1223.590 kb on + strandat 1223.752 kb on - strandat 1223.808 kb on + strandat 1223.808 kb on + strandat 1223.808 kb on + strandat 1223.809 kb on - strandat 1223.809 kb on - strandat 1223.809 kb on - strandat 1223.926 kb on - strand, within SMc00554at 1224.154 kb on - strand, within SMc00554at 1224.309 kb on + strand, within SMc00554at 1224.310 kb on - strand, within SMc00554at 1224.351 kb on + strand, within SMc00554at 1224.351 kb on + strand, within SMc00554at 1224.357 kb on + strand, within SMc00554at 1224.358 kb on - strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.930 kb on + strand, within SMc00554at 1224.966 kb on + strand, within SMc00554at 1225.277 kb on + strandat 1225.384 kb on - strand, within SMc00555at 1225.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,222,750 + -0.4
1,222,750 + +0.4
1,222,913 - -0.7
1,223,590 + -0.5
1,223,590 + +1.3
1,223,752 - +1.0
1,223,808 + +0.2
1,223,808 + +1.0
1,223,808 + +0.9
1,223,809 - +0.9
1,223,809 - -1.0
1,223,809 - -0.7
1,223,926 - SMc00554 0.18 +0.9
1,224,154 - SMc00554 0.33 +0.4
1,224,309 + SMc00554 0.43 +0.8
1,224,310 - SMc00554 0.43 +0.1
1,224,351 + SMc00554 0.46 -0.2
1,224,351 + SMc00554 0.46 -0.1
1,224,357 + SMc00554 0.47 +2.5
1,224,358 - SMc00554 0.47 -2.0
1,224,875 + SMc00554 0.81 -2.6
1,224,875 + SMc00554 0.81 -0.8
1,224,875 + SMc00554 0.81 +0.8
1,224,875 + SMc00554 0.81 +1.2
1,224,875 + SMc00554 0.81 -0.3
1,224,876 - SMc00554 0.81 -0.3
1,224,876 - SMc00554 0.81 -1.2
1,224,876 - SMc00554 0.81 +0.4
1,224,876 - SMc00554 0.81 +0.9
1,224,876 - SMc00554 0.81 +4.4
1,224,876 - SMc00554 0.81 +0.4
1,224,930 + SMc00554 0.85 +0.1
1,224,966 + SMc00554 0.87 -1.4
1,225,277 + -0.6
1,225,384 - SMc00555 0.14 -2.0
1,225,962 - +1.9

Or see this region's nucleotide sequence