Strain Fitness in Sinorhizobium meliloti 1021 around SMc00508

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00510 and SMc00509 overlap by 1 nucleotidesSMc00509 and SMc00508 are separated by 63 nucleotidesSMc00508 and SMc00507 are separated by 221 nucleotidesSMc00507 and SMc00506 are separated by 73 nucleotides SMc00510: SMc00510 - hypothetical protein, at 1,902,546 to 1,903,283 SMc00510 SMc00509: SMc00509 - hypothetical protein, at 1,903,283 to 1,903,840 SMc00509 SMc00508: SMc00508 - adenylosuccinate lyase, at 1,903,904 to 1,905,211 SMc00508 SMc00507: SMc00507 - hypothetical protein, at 1,905,433 to 1,905,771 SMc00507 SMc00506: SMc00506 - hypothetical protein, at 1,905,845 to 1,906,654 SMc00506 Position (kb) 1903 1904 1905 1906Strain fitness (log2 ratio) -2 -1 0 1 2at 1902.933 kb on + strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.934 kb on - strand, within SMc00510at 1902.934 kb on - strand, within SMc00510at 1902.972 kb on + strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1903.093 kb on + strand, within SMc00510at 1903.093 kb on + strand, within SMc00510at 1903.456 kb on + strand, within SMc00509at 1903.457 kb on - strand, within SMc00509at 1903.646 kb on + strand, within SMc00509at 1903.659 kb on - strand, within SMc00509at 1903.734 kb on - strand, within SMc00509at 1903.767 kb on + strand, within SMc00509at 1903.767 kb on + strand, within SMc00509at 1903.767 kb on + strand, within SMc00509at 1903.768 kb on - strand, within SMc00509at 1903.792 kb on - strandat 1903.792 kb on - strandat 1903.860 kb on + strandat 1903.860 kb on + strandat 1905.214 kb on - strandat 1905.414 kb on + strandat 1905.415 kb on - strandat 1905.473 kb on - strand, within SMc00507at 1905.473 kb on - strand, within SMc00507at 1905.518 kb on + strand, within SMc00507at 1905.751 kb on + strandat 1905.752 kb on - strandat 1905.755 kb on - strandat 1905.755 kb on - strandat 1905.883 kb on - strandat 1906.196 kb on - strand, within SMc00506

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,902,933 + SMc00510 0.52 +0.4
1,902,933 + SMc00510 0.52 +2.0
1,902,933 + SMc00510 0.52 +2.6
1,902,934 - SMc00510 0.53 -0.5
1,902,934 - SMc00510 0.53 -0.3
1,902,972 + SMc00510 0.58 +0.6
1,902,973 - SMc00510 0.58 -0.1
1,902,973 - SMc00510 0.58 +0.6
1,902,973 - SMc00510 0.58 -2.3
1,903,093 + SMc00510 0.74 -0.2
1,903,093 + SMc00510 0.74 +0.1
1,903,456 + SMc00509 0.31 +0.2
1,903,457 - SMc00509 0.31 -0.5
1,903,646 + SMc00509 0.65 +0.3
1,903,659 - SMc00509 0.67 +0.3
1,903,734 - SMc00509 0.81 +0.4
1,903,767 + SMc00509 0.87 +2.5
1,903,767 + SMc00509 0.87 -0.2
1,903,767 + SMc00509 0.87 +0.2
1,903,768 - SMc00509 0.87 +0.4
1,903,792 - +0.9
1,903,792 - +0.6
1,903,860 + +0.4
1,903,860 + -0.6
1,905,214 - +1.0
1,905,414 + -0.3
1,905,415 - -0.4
1,905,473 - SMc00507 0.12 -0.4
1,905,473 - SMc00507 0.12 -0.7
1,905,518 + SMc00507 0.25 -1.2
1,905,751 + +0.2
1,905,752 - -0.3
1,905,755 - +0.3
1,905,755 - -0.5
1,905,883 - +1.3
1,906,196 - SMc00506 0.43 -2.3

Or see this region's nucleotide sequence