Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00193 and SMc00192 are separated by 127 nucleotides SMc00192 and SMc00191 are separated by 407 nucleotides SMc00191 and SMc00190 are separated by 616 nucleotides
SMc00193: SMc00193 - hypothetical protein, at 1,963,692 to 1,963,859
SMc00193
SMc00192: SMc00192 - ferredoxin, 2FE-2S FDII electron transport iron-sulfur protein, at 1,963,987 to 1,964,307
SMc00192
SMc00191: SMc00191 - hypothetical protein, at 1,964,715 to 1,965,083
SMc00191
SMc00190: SMc00190 - hypothetical protein, at 1,965,700 to 1,971,969
SMc00190
Position (kb)
1964
1965
1966 Strain fitness (log2 ratio)
-2
-1
0
1 at 1963.839 kb on - strand, within SMc00193 at 1964.366 kb on - strand at 1964.498 kb on + strand at 1964.499 kb on - strand at 1964.992 kb on + strand, within SMc00191 at 1964.993 kb on - strand, within SMc00191 at 1964.993 kb on - strand, within SMc00191 at 1965.097 kb on - strand at 1965.421 kb on + strand at 1965.421 kb on + strand at 1965.461 kb on + strand at 1965.475 kb on + strand at 1965.475 kb on + strand at 1965.561 kb on + strand at 1965.561 kb on + strand at 1965.561 kb on + strand at 1965.581 kb on + strand at 1965.680 kb on + strand at 1965.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,963,839 - SMc00193 0.88 +0.7 1,964,366 - -0.3 1,964,498 + +0.3 1,964,499 - -0.2 1,964,992 + SMc00191 0.75 -2.3 1,964,993 - SMc00191 0.75 +0.3 1,964,993 - SMc00191 0.75 +0.3 1,965,097 - -1.3 1,965,421 + -0.4 1,965,421 + +0.6 1,965,461 + -0.4 1,965,475 + -2.0 1,965,475 + -1.4 1,965,561 + -0.2 1,965,561 + +0.3 1,965,561 + -0.9 1,965,581 + -1.2 1,965,680 + +1.0 1,965,680 + -0.8
Or see this region's nucleotide sequence