Strain Fitness in Sinorhizobium meliloti 1021 around SMc00069

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00001 and SMc00069 are separated by 23 nucleotidesSMc00069 and SMc00002 are separated by 141 nucleotidesSMc00002 and SMc00003 are separated by 205 nucleotides SMc00001: SMc00001 - hypothetical protein, at 982,728 to 983,786 SMc00001 SMc00069: SMc00069 - pyridoxamine 5'-phosphate oxidase, at 983,810 to 984,430 SMc00069 SMc00002: SMc00002 - hypothetical protein, at 984,572 to 985,027 SMc00002 SMc00003: SMc00003 - chaperone protein, at 985,233 to 986,288 SMc00003 Position (kb) 983 984 985Strain fitness (log2 ratio) -2 -1 0 1 2 3at 983.058 kb on + strand, within SMc00001at 983.066 kb on + strand, within SMc00001at 983.137 kb on - strand, within SMc00001at 983.236 kb on + strand, within SMc00001at 983.237 kb on - strand, within SMc00001at 983.290 kb on - strand, within SMc00001at 983.333 kb on + strand, within SMc00001at 983.334 kb on - strand, within SMc00001at 983.568 kb on + strand, within SMc00001at 983.727 kb on + strandat 983.727 kb on + strandat 983.728 kb on - strandat 983.728 kb on - strandat 984.431 kb on - strandat 984.501 kb on + strandat 984.502 kb on - strandat 984.502 kb on - strandat 984.505 kb on - strandat 984.505 kb on - strandat 984.505 kb on - strandat 984.505 kb on - strandat 984.582 kb on + strandat 984.582 kb on + strandat 984.583 kb on - strandat 984.583 kb on - strandat 984.583 kb on - strandat 984.583 kb on - strandat 984.999 kb on - strandat 984.999 kb on - strandat 984.999 kb on - strandat 985.038 kb on + strandat 985.045 kb on - strandat 985.045 kb on - strandat 985.045 kb on - strandat 985.119 kb on - strandat 985.123 kb on - strandat 985.257 kb on + strandat 985.258 kb on - strandat 985.398 kb on + strand, within SMc00003

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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983,058 + SMc00001 0.31 +0.2
983,066 + SMc00001 0.32 -0.8
983,137 - SMc00001 0.39 +0.7
983,236 + SMc00001 0.48 +0.6
983,237 - SMc00001 0.48 +0.2
983,290 - SMc00001 0.53 -1.6
983,333 + SMc00001 0.57 +0.5
983,334 - SMc00001 0.57 +0.1
983,568 + SMc00001 0.79 +2.8
983,727 + -0.9
983,727 + +1.0
983,728 - -1.2
983,728 - +1.1
984,431 - +0.3
984,501 + -0.6
984,502 - -0.7
984,502 - -0.1
984,505 - -1.0
984,505 - -0.8
984,505 - +0.5
984,505 - -1.8
984,582 + +0.8
984,582 + -0.5
984,583 - -0.7
984,583 - +0.6
984,583 - -1.0
984,583 - +0.1
984,999 - -0.5
984,999 - -0.9
984,999 - +0.9
985,038 + +0.1
985,045 - -1.0
985,045 - -1.2
985,045 - -0.8
985,119 - +0.5
985,123 - +1.8
985,257 + +0.6
985,258 - -0.9
985,398 + SMc00003 0.16 -0.4

Or see this region's nucleotide sequence