Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00001 and SMc00069 are separated by 23 nucleotides SMc00069 and SMc00002 are separated by 141 nucleotides SMc00002 and SMc00003 are separated by 205 nucleotides
SMc00001: SMc00001 - hypothetical protein, at 982,728 to 983,786
SMc00001
SMc00069: SMc00069 - pyridoxamine 5'-phosphate oxidase, at 983,810 to 984,430
SMc00069
SMc00002: SMc00002 - hypothetical protein, at 984,572 to 985,027
SMc00002
SMc00003: SMc00003 - chaperone protein, at 985,233 to 986,288
SMc00003
Position (kb)
983
984
985 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 983.058 kb on + strand, within SMc00001 at 983.066 kb on + strand, within SMc00001 at 983.137 kb on - strand, within SMc00001 at 983.236 kb on + strand, within SMc00001 at 983.237 kb on - strand, within SMc00001 at 983.290 kb on - strand, within SMc00001 at 983.333 kb on + strand, within SMc00001 at 983.334 kb on - strand, within SMc00001 at 983.568 kb on + strand, within SMc00001 at 983.727 kb on + strand at 983.727 kb on + strand at 983.728 kb on - strand at 983.728 kb on - strand at 984.431 kb on - strand at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.582 kb on + strand at 984.582 kb on + strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.999 kb on - strand at 984.999 kb on - strand at 984.999 kb on - strand at 985.038 kb on + strand at 985.045 kb on - strand at 985.045 kb on - strand at 985.045 kb on - strand at 985.119 kb on - strand at 985.123 kb on - strand at 985.257 kb on + strand at 985.258 kb on - strand at 985.398 kb on + strand, within SMc00003
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 983,058 + SMc00001 0.31 +0.2 983,066 + SMc00001 0.32 -0.8 983,137 - SMc00001 0.39 +0.7 983,236 + SMc00001 0.48 +0.6 983,237 - SMc00001 0.48 +0.2 983,290 - SMc00001 0.53 -1.6 983,333 + SMc00001 0.57 +0.5 983,334 - SMc00001 0.57 +0.1 983,568 + SMc00001 0.79 +2.8 983,727 + -0.9 983,727 + +1.0 983,728 - -1.2 983,728 - +1.1 984,431 - +0.3 984,501 + -0.6 984,502 - -0.7 984,502 - -0.1 984,505 - -1.0 984,505 - -0.8 984,505 - +0.5 984,505 - -1.8 984,582 + +0.8 984,582 + -0.5 984,583 - -0.7 984,583 - +0.6 984,583 - -1.0 984,583 - +0.1 984,999 - -0.5 984,999 - -0.9 984,999 - +0.9 985,038 + +0.1 985,045 - -1.0 985,045 - -1.2 985,045 - -0.8 985,119 - +0.5 985,123 - +1.8 985,257 + +0.6 985,258 - -0.9 985,398 + SMc00003 0.16 -0.4
Or see this region's nucleotide sequence