Strain Fitness in Sinorhizobium meliloti 1021 around SMa2287

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2285 and SMa2287 are separated by 131 nucleotidesSMa2287 and SMa2289 are separated by 140 nucleotidesSMa2289 and SMa2291 are separated by 1 nucleotides SMa2285: SMa2285 - hypothetical protein, at 1,271,330 to 1,271,806 SMa2285 SMa2287: SMa2287 - LysR family transcriptional regulator, at 1,271,938 to 1,272,870 SMa2287 SMa2289: SMa2289 - hypothetical protein, at 1,273,011 to 1,273,403 SMa2289 SMa2291: SMa2291 - dehydrogenase, at 1,273,405 to 1,274,517 SMa2291 Position (kb) 1271 1272 1273Strain fitness (log2 ratio) -2 -1 0 1 2at 1270.952 kb on + strandat 1270.952 kb on + strandat 1270.953 kb on - strandat 1271.027 kb on + strandat 1271.124 kb on + strandat 1271.487 kb on + strand, within SMa2285at 1271.487 kb on + strand, within SMa2285at 1271.610 kb on + strand, within SMa2285at 1271.610 kb on + strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.611 kb on - strand, within SMa2285at 1271.637 kb on + strand, within SMa2285at 1271.637 kb on + strand, within SMa2285at 1271.638 kb on - strand, within SMa2285at 1271.638 kb on - strand, within SMa2285at 1271.666 kb on - strand, within SMa2285at 1271.728 kb on + strand, within SMa2285at 1271.729 kb on - strand, within SMa2285at 1271.729 kb on - strand, within SMa2285at 1271.729 kb on - strand, within SMa2285at 1271.754 kb on - strand, within SMa2285at 1271.757 kb on - strand, within SMa2285at 1271.819 kb on + strandat 1271.920 kb on + strandat 1271.935 kb on - strandat 1271.935 kb on - strandat 1272.057 kb on - strand, within SMa2287at 1272.057 kb on - strand, within SMa2287at 1272.089 kb on - strand, within SMa2287at 1272.209 kb on + strand, within SMa2287at 1272.213 kb on + strand, within SMa2287at 1272.423 kb on - strand, within SMa2287at 1272.516 kb on - strand, within SMa2287at 1272.889 kb on + strandat 1272.890 kb on - strandat 1272.946 kb on + strandat 1272.946 kb on + strandat 1272.946 kb on + strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1273.048 kb on - strandat 1273.279 kb on + strand, within SMa2289at 1273.549 kb on + strand, within SMa2291at 1273.552 kb on + strand, within SMa2291at 1273.552 kb on + strand, within SMa2291at 1273.553 kb on - strand, within SMa2291at 1273.604 kb on - strand, within SMa2291at 1273.604 kb on - strand, within SMa2291at 1273.604 kb on - strand, within SMa2291at 1273.618 kb on + strand, within SMa2291at 1273.619 kb on - strand, within SMa2291at 1273.631 kb on - strand, within SMa2291at 1273.765 kb on + strand, within SMa2291

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,270,952 + -2.0
1,270,952 + +0.8
1,270,953 - +0.7
1,271,027 + -2.1
1,271,124 + -1.0
1,271,487 + SMa2285 0.33 +1.8
1,271,487 + SMa2285 0.33 -0.6
1,271,610 + SMa2285 0.59 -0.9
1,271,610 + SMa2285 0.59 +0.2
1,271,611 - SMa2285 0.59 -0.8
1,271,611 - SMa2285 0.59 +0.2
1,271,611 - SMa2285 0.59 +1.3
1,271,611 - SMa2285 0.59 +2.5
1,271,637 + SMa2285 0.64 -2.0
1,271,637 + SMa2285 0.64 -0.4
1,271,638 - SMa2285 0.65 +2.0
1,271,638 - SMa2285 0.65 +1.1
1,271,666 - SMa2285 0.70 +0.8
1,271,728 + SMa2285 0.83 -0.4
1,271,729 - SMa2285 0.84 -0.8
1,271,729 - SMa2285 0.84 +1.1
1,271,729 - SMa2285 0.84 +1.4
1,271,754 - SMa2285 0.89 +0.8
1,271,757 - SMa2285 0.90 -0.3
1,271,819 + -1.3
1,271,920 + -2.2
1,271,935 - -1.1
1,271,935 - +0.5
1,272,057 - SMa2287 0.13 -1.0
1,272,057 - SMa2287 0.13 -1.5
1,272,089 - SMa2287 0.16 +0.2
1,272,209 + SMa2287 0.29 -0.3
1,272,213 + SMa2287 0.29 -0.3
1,272,423 - SMa2287 0.52 -0.6
1,272,516 - SMa2287 0.62 -2.0
1,272,889 + -0.4
1,272,890 - -0.1
1,272,946 + +0.1
1,272,946 + +0.5
1,272,946 + -0.6
1,272,947 - +1.5
1,272,947 - -2.1
1,272,947 - +0.3
1,272,947 - -1.0
1,272,947 - -0.3
1,272,947 - -1.0
1,272,947 - -1.2
1,273,048 - -0.5
1,273,279 + SMa2289 0.68 +0.1
1,273,549 + SMa2291 0.13 -1.6
1,273,552 + SMa2291 0.13 -0.5
1,273,552 + SMa2291 0.13 -1.4
1,273,553 - SMa2291 0.13 +0.7
1,273,604 - SMa2291 0.18 +0.2
1,273,604 - SMa2291 0.18 +0.6
1,273,604 - SMa2291 0.18 -0.2
1,273,618 + SMa2291 0.19 -0.4
1,273,619 - SMa2291 0.19 +0.4
1,273,631 - SMa2291 0.20 -0.7
1,273,765 + SMa2291 0.32 +0.3

Or see this region's nucleotide sequence