Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2285 and SMa2287 are separated by 131 nucleotides SMa2287 and SMa2289 are separated by 140 nucleotides SMa2289 and SMa2291 are separated by 1 nucleotides
SMa2285: SMa2285 - hypothetical protein, at 1,271,330 to 1,271,806
SMa2285
SMa2287: SMa2287 - LysR family transcriptional regulator, at 1,271,938 to 1,272,870
SMa2287
SMa2289: SMa2289 - hypothetical protein, at 1,273,011 to 1,273,403
SMa2289
SMa2291: SMa2291 - dehydrogenase, at 1,273,405 to 1,274,517
SMa2291
Position (kb)
1271
1272
1273 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1270.952 kb on + strand at 1270.952 kb on + strand at 1270.953 kb on - strand at 1271.027 kb on + strand at 1271.124 kb on + strand at 1271.487 kb on + strand, within SMa2285 at 1271.487 kb on + strand, within SMa2285 at 1271.610 kb on + strand, within SMa2285 at 1271.610 kb on + strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.611 kb on - strand, within SMa2285 at 1271.637 kb on + strand, within SMa2285 at 1271.637 kb on + strand, within SMa2285 at 1271.638 kb on - strand, within SMa2285 at 1271.638 kb on - strand, within SMa2285 at 1271.666 kb on - strand, within SMa2285 at 1271.728 kb on + strand, within SMa2285 at 1271.729 kb on - strand, within SMa2285 at 1271.729 kb on - strand, within SMa2285 at 1271.729 kb on - strand, within SMa2285 at 1271.754 kb on - strand, within SMa2285 at 1271.757 kb on - strand, within SMa2285 at 1271.819 kb on + strand at 1271.920 kb on + strand at 1271.935 kb on - strand at 1271.935 kb on - strand at 1272.057 kb on - strand, within SMa2287 at 1272.057 kb on - strand, within SMa2287 at 1272.089 kb on - strand, within SMa2287 at 1272.209 kb on + strand, within SMa2287 at 1272.213 kb on + strand, within SMa2287 at 1272.423 kb on - strand, within SMa2287 at 1272.516 kb on - strand, within SMa2287 at 1272.889 kb on + strand at 1272.890 kb on - strand at 1272.946 kb on + strand at 1272.946 kb on + strand at 1272.946 kb on + strand at 1272.947 kb on - strand at 1272.947 kb on - strand at 1272.947 kb on - strand at 1272.947 kb on - strand at 1272.947 kb on - strand at 1272.947 kb on - strand at 1272.947 kb on - strand at 1273.048 kb on - strand at 1273.279 kb on + strand, within SMa2289 at 1273.549 kb on + strand, within SMa2291 at 1273.552 kb on + strand, within SMa2291 at 1273.552 kb on + strand, within SMa2291 at 1273.553 kb on - strand, within SMa2291 at 1273.604 kb on - strand, within SMa2291 at 1273.604 kb on - strand, within SMa2291 at 1273.604 kb on - strand, within SMa2291 at 1273.618 kb on + strand, within SMa2291 at 1273.619 kb on - strand, within SMa2291 at 1273.631 kb on - strand, within SMa2291 at 1273.765 kb on + strand, within SMa2291
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,270,952 + -2.0 1,270,952 + +0.8 1,270,953 - +0.7 1,271,027 + -2.1 1,271,124 + -1.0 1,271,487 + SMa2285 0.33 +1.8 1,271,487 + SMa2285 0.33 -0.6 1,271,610 + SMa2285 0.59 -0.9 1,271,610 + SMa2285 0.59 +0.2 1,271,611 - SMa2285 0.59 -0.8 1,271,611 - SMa2285 0.59 +0.2 1,271,611 - SMa2285 0.59 +1.3 1,271,611 - SMa2285 0.59 +2.5 1,271,637 + SMa2285 0.64 -2.0 1,271,637 + SMa2285 0.64 -0.4 1,271,638 - SMa2285 0.65 +2.0 1,271,638 - SMa2285 0.65 +1.1 1,271,666 - SMa2285 0.70 +0.8 1,271,728 + SMa2285 0.83 -0.4 1,271,729 - SMa2285 0.84 -0.8 1,271,729 - SMa2285 0.84 +1.1 1,271,729 - SMa2285 0.84 +1.4 1,271,754 - SMa2285 0.89 +0.8 1,271,757 - SMa2285 0.90 -0.3 1,271,819 + -1.3 1,271,920 + -2.2 1,271,935 - -1.1 1,271,935 - +0.5 1,272,057 - SMa2287 0.13 -1.0 1,272,057 - SMa2287 0.13 -1.5 1,272,089 - SMa2287 0.16 +0.2 1,272,209 + SMa2287 0.29 -0.3 1,272,213 + SMa2287 0.29 -0.3 1,272,423 - SMa2287 0.52 -0.6 1,272,516 - SMa2287 0.62 -2.0 1,272,889 + -0.4 1,272,890 - -0.1 1,272,946 + +0.1 1,272,946 + +0.5 1,272,946 + -0.6 1,272,947 - +1.5 1,272,947 - -2.1 1,272,947 - +0.3 1,272,947 - -1.0 1,272,947 - -0.3 1,272,947 - -1.0 1,272,947 - -1.2 1,273,048 - -0.5 1,273,279 + SMa2289 0.68 +0.1 1,273,549 + SMa2291 0.13 -1.6 1,273,552 + SMa2291 0.13 -0.5 1,273,552 + SMa2291 0.13 -1.4 1,273,553 - SMa2291 0.13 +0.7 1,273,604 - SMa2291 0.18 +0.2 1,273,604 - SMa2291 0.18 +0.6 1,273,604 - SMa2291 0.18 -0.2 1,273,618 + SMa2291 0.19 -0.4 1,273,619 - SMa2291 0.19 +0.4 1,273,631 - SMa2291 0.20 -0.7 1,273,765 + SMa2291 0.32 +0.3
Or see this region's nucleotide sequence