Strain Fitness in Sinorhizobium meliloti 1021 around SMa2131

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2129 and SMa2131 are separated by 245 nucleotidesSMa2131 and SMa2133 are separated by 169 nucleotides SMa2129: SMa2129 - hypothetical protein, at 1,203,291 to 1,204,310 SMa2129 SMa2131: SMa2131 - hypothetical protein, at 1,204,556 to 1,205,452 SMa2131 SMa2133: SMa2133 - hypothetical protein, at 1,205,622 to 1,206,413 SMa2133 Position (kb) 1204 1205 1206Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1203.591 kb on - strand, within SMa2129at 1203.874 kb on + strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.898 kb on + strand, within SMa2129at 1203.898 kb on + strand, within SMa2129at 1203.907 kb on + strand, within SMa2129at 1203.908 kb on - strand, within SMa2129at 1203.908 kb on - strand, within SMa2129at 1203.988 kb on - strand, within SMa2129at 1204.019 kb on + strand, within SMa2129at 1204.020 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.305 kb on - strandat 1204.305 kb on - strandat 1204.310 kb on + strandat 1204.310 kb on + strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.315 kb on + strandat 1204.316 kb on - strandat 1204.334 kb on + strandat 1204.335 kb on - strandat 1204.499 kb on - strandat 1204.523 kb on + strandat 1204.721 kb on - strand, within SMa2131at 1204.777 kb on + strand, within SMa2131at 1204.777 kb on + strand, within SMa2131at 1204.778 kb on - strand, within SMa2131at 1204.778 kb on - strand, within SMa2131at 1204.783 kb on + strand, within SMa2131at 1204.784 kb on - strand, within SMa2131at 1204.784 kb on - strand, within SMa2131at 1204.869 kb on + strand, within SMa2131at 1204.903 kb on - strand, within SMa2131at 1204.909 kb on - strand, within SMa2131at 1205.013 kb on + strand, within SMa2131at 1205.013 kb on + strand, within SMa2131at 1205.030 kb on - strand, within SMa2131at 1205.557 kb on + strandat 1205.566 kb on + strandat 1205.566 kb on + strandat 1205.567 kb on - strandat 1205.678 kb on + strandat 1205.723 kb on - strand, within SMa2133at 1205.774 kb on - strand, within SMa2133at 1205.856 kb on + strand, within SMa2133at 1205.949 kb on - strand, within SMa2133at 1205.994 kb on + strand, within SMa2133at 1205.994 kb on + strand, within SMa2133at 1206.115 kb on + strand, within SMa2133at 1206.115 kb on + strand, within SMa2133at 1206.116 kb on - strand, within SMa2133at 1206.134 kb on - strand, within SMa2133at 1206.173 kb on + strand, within SMa2133at 1206.173 kb on + strand, within SMa2133at 1206.174 kb on - strand, within SMa2133at 1206.211 kb on + strand, within SMa2133at 1206.259 kb on - strand, within SMa2133at 1206.259 kb on - strand, within SMa2133at 1206.319 kb on + strand, within SMa2133at 1206.320 kb on - strand, within SMa2133at 1206.320 kb on - strand, within SMa2133at 1206.340 kb on + strandat 1206.340 kb on + strandat 1206.340 kb on + strandat 1206.358 kb on + strandat 1206.396 kb on + strandat 1206.396 kb on + strandat 1206.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,203,591 - SMa2129 0.29 +1.0
1,203,874 + SMa2129 0.57 +2.4
1,203,875 - SMa2129 0.57 -1.0
1,203,875 - SMa2129 0.57 +1.2
1,203,875 - SMa2129 0.57 -1.3
1,203,898 + SMa2129 0.60 -0.2
1,203,898 + SMa2129 0.60 +0.1
1,203,907 + SMa2129 0.60 +0.2
1,203,908 - SMa2129 0.60 +0.1
1,203,908 - SMa2129 0.60 +0.0
1,203,988 - SMa2129 0.68 +6.7
1,204,019 + SMa2129 0.71 +0.8
1,204,020 - SMa2129 0.71 +0.3
1,204,105 - SMa2129 0.80 -0.8
1,204,105 - SMa2129 0.80 +0.5
1,204,105 - SMa2129 0.80 -1.0
1,204,305 - +0.4
1,204,305 - -1.0
1,204,310 + -0.3
1,204,310 + -0.6
1,204,311 - +1.4
1,204,311 - -0.2
1,204,311 - -0.3
1,204,311 - -0.6
1,204,311 - +0.5
1,204,311 - -0.1
1,204,315 + -0.0
1,204,316 - -0.0
1,204,334 + +2.1
1,204,335 - +0.7
1,204,499 - +0.3
1,204,523 + -0.4
1,204,721 - SMa2131 0.18 +0.2
1,204,777 + SMa2131 0.25 -0.6
1,204,777 + SMa2131 0.25 -1.8
1,204,778 - SMa2131 0.25 -0.5
1,204,778 - SMa2131 0.25 -0.9
1,204,783 + SMa2131 0.25 +0.2
1,204,784 - SMa2131 0.25 -0.4
1,204,784 - SMa2131 0.25 -0.4
1,204,869 + SMa2131 0.35 +1.5
1,204,903 - SMa2131 0.39 -0.8
1,204,909 - SMa2131 0.39 -0.1
1,205,013 + SMa2131 0.51 +0.2
1,205,013 + SMa2131 0.51 -2.2
1,205,030 - SMa2131 0.53 -1.6
1,205,557 + -0.5
1,205,566 + -0.1
1,205,566 + -0.0
1,205,567 - -2.6
1,205,678 + -0.2
1,205,723 - SMa2133 0.13 +1.8
1,205,774 - SMa2133 0.19 +0.3
1,205,856 + SMa2133 0.30 +2.0
1,205,949 - SMa2133 0.41 +0.3
1,205,994 + SMa2133 0.47 +1.0
1,205,994 + SMa2133 0.47 -0.0
1,206,115 + SMa2133 0.62 -0.1
1,206,115 + SMa2133 0.62 -1.1
1,206,116 - SMa2133 0.62 -0.6
1,206,134 - SMa2133 0.65 -0.1
1,206,173 + SMa2133 0.70 +0.5
1,206,173 + SMa2133 0.70 -0.3
1,206,174 - SMa2133 0.70 +0.6
1,206,211 + SMa2133 0.74 -1.4
1,206,259 - SMa2133 0.80 -1.4
1,206,259 - SMa2133 0.80 +0.3
1,206,319 + SMa2133 0.88 -0.3
1,206,320 - SMa2133 0.88 -0.7
1,206,320 - SMa2133 0.88 +0.3
1,206,340 + +0.2
1,206,340 + -0.1
1,206,340 + -0.7
1,206,358 + -0.6
1,206,396 + +0.0
1,206,396 + +0.6
1,206,397 - -0.9

Or see this region's nucleotide sequence