Strain Fitness in Sinorhizobium meliloti 1021 around SMa2129

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2127 and SMa2129 are separated by 32 nucleotidesSMa2129 and SMa2131 are separated by 245 nucleotides SMa2127: SMa2127 - ABC transporter ATP-binding protein, at 1,201,708 to 1,203,258 SMa2127 SMa2129: SMa2129 - hypothetical protein, at 1,203,291 to 1,204,310 SMa2129 SMa2131: SMa2131 - hypothetical protein, at 1,204,556 to 1,205,452 SMa2131 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1202.302 kb on + strand, within SMa2127at 1202.796 kb on - strand, within SMa2127at 1202.962 kb on - strand, within SMa2127at 1203.049 kb on + strand, within SMa2127at 1203.099 kb on - strand, within SMa2127at 1203.099 kb on - strand, within SMa2127at 1203.099 kb on - strand, within SMa2127at 1203.101 kb on + strand, within SMa2127at 1203.101 kb on + strand, within SMa2127at 1203.276 kb on - strandat 1203.276 kb on - strandat 1203.437 kb on + strand, within SMa2129at 1203.438 kb on - strand, within SMa2129at 1203.438 kb on - strand, within SMa2129at 1203.470 kb on - strand, within SMa2129at 1203.553 kb on - strand, within SMa2129at 1203.554 kb on + strand, within SMa2129at 1203.591 kb on - strand, within SMa2129at 1203.874 kb on + strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.875 kb on - strand, within SMa2129at 1203.898 kb on + strand, within SMa2129at 1203.898 kb on + strand, within SMa2129at 1203.907 kb on + strand, within SMa2129at 1203.908 kb on - strand, within SMa2129at 1203.908 kb on - strand, within SMa2129at 1203.988 kb on - strand, within SMa2129at 1204.019 kb on + strand, within SMa2129at 1204.020 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.105 kb on - strand, within SMa2129at 1204.305 kb on - strandat 1204.305 kb on - strandat 1204.310 kb on + strandat 1204.310 kb on + strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.311 kb on - strandat 1204.315 kb on + strandat 1204.316 kb on - strandat 1204.334 kb on + strandat 1204.335 kb on - strandat 1204.499 kb on - strandat 1204.523 kb on + strandat 1204.721 kb on - strand, within SMa2131at 1204.777 kb on + strand, within SMa2131at 1204.777 kb on + strand, within SMa2131at 1204.778 kb on - strand, within SMa2131at 1204.778 kb on - strand, within SMa2131at 1204.783 kb on + strand, within SMa2131at 1204.784 kb on - strand, within SMa2131at 1204.784 kb on - strand, within SMa2131at 1204.869 kb on + strand, within SMa2131at 1204.903 kb on - strand, within SMa2131at 1204.909 kb on - strand, within SMa2131at 1205.013 kb on + strand, within SMa2131at 1205.013 kb on + strand, within SMa2131at 1205.030 kb on - strand, within SMa2131

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,202,302 + SMa2127 0.38 +0.2
1,202,796 - SMa2127 0.70 +1.0
1,202,962 - SMa2127 0.81 +0.1
1,203,049 + SMa2127 0.86 +0.2
1,203,099 - SMa2127 0.90 -0.3
1,203,099 - SMa2127 0.90 -0.6
1,203,099 - SMa2127 0.90 -0.9
1,203,101 + SMa2127 0.90 +0.2
1,203,101 + SMa2127 0.90 +0.8
1,203,276 - -0.7
1,203,276 - +0.0
1,203,437 + SMa2129 0.14 -0.8
1,203,438 - SMa2129 0.14 -0.1
1,203,438 - SMa2129 0.14 -1.3
1,203,470 - SMa2129 0.18 +1.3
1,203,553 - SMa2129 0.26 -1.5
1,203,554 + SMa2129 0.26 +0.8
1,203,591 - SMa2129 0.29 +1.0
1,203,874 + SMa2129 0.57 +2.4
1,203,875 - SMa2129 0.57 -1.0
1,203,875 - SMa2129 0.57 +1.2
1,203,875 - SMa2129 0.57 -1.3
1,203,898 + SMa2129 0.60 -0.2
1,203,898 + SMa2129 0.60 +0.1
1,203,907 + SMa2129 0.60 +0.2
1,203,908 - SMa2129 0.60 +0.1
1,203,908 - SMa2129 0.60 +0.0
1,203,988 - SMa2129 0.68 +6.7
1,204,019 + SMa2129 0.71 +0.8
1,204,020 - SMa2129 0.71 +0.3
1,204,105 - SMa2129 0.80 -0.8
1,204,105 - SMa2129 0.80 +0.5
1,204,105 - SMa2129 0.80 -1.0
1,204,305 - +0.4
1,204,305 - -1.0
1,204,310 + -0.3
1,204,310 + -0.6
1,204,311 - +1.4
1,204,311 - -0.2
1,204,311 - -0.3
1,204,311 - -0.6
1,204,311 - +0.5
1,204,311 - -0.1
1,204,315 + -0.0
1,204,316 - -0.0
1,204,334 + +2.1
1,204,335 - +0.7
1,204,499 - +0.3
1,204,523 + -0.4
1,204,721 - SMa2131 0.18 +0.2
1,204,777 + SMa2131 0.25 -0.6
1,204,777 + SMa2131 0.25 -1.8
1,204,778 - SMa2131 0.25 -0.5
1,204,778 - SMa2131 0.25 -0.9
1,204,783 + SMa2131 0.25 +0.2
1,204,784 - SMa2131 0.25 -0.4
1,204,784 - SMa2131 0.25 -0.4
1,204,869 + SMa2131 0.35 +1.5
1,204,903 - SMa2131 0.39 -0.8
1,204,909 - SMa2131 0.39 -0.1
1,205,013 + SMa2131 0.51 +0.2
1,205,013 + SMa2131 0.51 -2.2
1,205,030 - SMa2131 0.53 -1.6

Or see this region's nucleotide sequence