Strain Fitness in Sinorhizobium meliloti 1021 around SMa1857

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1855 and SMa1857 are separated by 92 nucleotidesSMa1857 and SMa1860 are separated by 69 nucleotides SMa1855: SMa1855 - hypothetical protein, at 1,052,536 to 1,053,912 SMa1855 SMa1857: SMa1857 - hydrolase, at 1,054,005 to 1,054,865 SMa1857 SMa1860: SMa1860 - ABC transporter substrate-binding protein, at 1,054,935 to 1,056,545 SMa1860 Position (kb) 1054 1055Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1053.193 kb on + strand, within SMa1855at 1053.194 kb on - strand, within SMa1855at 1053.194 kb on - strand, within SMa1855at 1053.204 kb on + strand, within SMa1855at 1053.204 kb on + strand, within SMa1855at 1053.403 kb on + strand, within SMa1855at 1053.443 kb on - strand, within SMa1855at 1053.443 kb on - strand, within SMa1855at 1053.496 kb on + strand, within SMa1855at 1053.497 kb on - strand, within SMa1855at 1053.497 kb on - strand, within SMa1855at 1053.797 kb on - strandat 1054.096 kb on - strand, within SMa1857at 1054.096 kb on - strand, within SMa1857at 1054.096 kb on - strand, within SMa1857at 1054.096 kb on - strand, within SMa1857at 1054.180 kb on - strand, within SMa1857at 1054.315 kb on - strand, within SMa1857at 1054.359 kb on + strand, within SMa1857at 1054.575 kb on - strand, within SMa1857at 1054.692 kb on + strand, within SMa1857at 1054.976 kb on + strandat 1054.977 kb on - strandat 1055.120 kb on + strand, within SMa1860at 1055.196 kb on + strand, within SMa1860at 1055.197 kb on - strand, within SMa1860at 1055.217 kb on + strand, within SMa1860at 1055.218 kb on - strand, within SMa1860at 1055.218 kb on - strand, within SMa1860at 1055.219 kb on + strand, within SMa1860at 1055.490 kb on - strand, within SMa1860at 1055.490 kb on - strand, within SMa1860at 1055.641 kb on - strand, within SMa1860at 1055.823 kb on + strand, within SMa1860at 1055.823 kb on + strand, within SMa1860at 1055.824 kb on - strand, within SMa1860at 1055.824 kb on - strand, within SMa1860

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,053,193 + SMa1855 0.48 -1.4
1,053,194 - SMa1855 0.48 -0.3
1,053,194 - SMa1855 0.48 -2.2
1,053,204 + SMa1855 0.49 -0.3
1,053,204 + SMa1855 0.49 +1.0
1,053,403 + SMa1855 0.63 +0.1
1,053,443 - SMa1855 0.66 +1.8
1,053,443 - SMa1855 0.66 -1.7
1,053,496 + SMa1855 0.70 -0.4
1,053,497 - SMa1855 0.70 -0.2
1,053,497 - SMa1855 0.70 -1.0
1,053,797 - -0.2
1,054,096 - SMa1857 0.11 +0.8
1,054,096 - SMa1857 0.11 -0.5
1,054,096 - SMa1857 0.11 +0.0
1,054,096 - SMa1857 0.11 +0.2
1,054,180 - SMa1857 0.20 -0.8
1,054,315 - SMa1857 0.36 -1.6
1,054,359 + SMa1857 0.41 -0.4
1,054,575 - SMa1857 0.66 +3.3
1,054,692 + SMa1857 0.80 +0.2
1,054,976 + -0.3
1,054,977 - -2.7
1,055,120 + SMa1860 0.11 -1.4
1,055,196 + SMa1860 0.16 -1.3
1,055,197 - SMa1860 0.16 +0.4
1,055,217 + SMa1860 0.18 -0.4
1,055,218 - SMa1860 0.18 +0.2
1,055,218 - SMa1860 0.18 -0.2
1,055,219 + SMa1860 0.18 -0.8
1,055,490 - SMa1860 0.34 +0.1
1,055,490 - SMa1860 0.34 +0.4
1,055,641 - SMa1860 0.44 -0.5
1,055,823 + SMa1860 0.55 -0.9
1,055,823 + SMa1860 0.55 +0.6
1,055,824 - SMa1860 0.55 +1.1
1,055,824 - SMa1860 0.55 +1.4

Or see this region's nucleotide sequence