Strain Fitness in Sinorhizobium meliloti 1021 around SMa1840

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1838 and SMa1840 are separated by 89 nucleotidesSMa1840 and SMa1844 are separated by 332 nucleotides SMa1838: SMa1838 - dehydrogenase, at 1,043,438 to 1,044,361 SMa1838 SMa1840: SMa1840 - hypothetical protein, at 1,044,451 to 1,044,804 SMa1840 SMa1844: SMa1844 - aldehyde, at 1,045,137 to 1,046,600 SMa1844 Position (kb) 1044 1045Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1043.726 kb on + strand, within SMa1838at 1043.727 kb on - strand, within SMa1838at 1043.955 kb on + strand, within SMa1838at 1044.046 kb on + strand, within SMa1838at 1044.046 kb on + strand, within SMa1838at 1044.356 kb on + strandat 1044.387 kb on + strandat 1044.388 kb on - strandat 1044.388 kb on - strandat 1044.430 kb on + strandat 1044.431 kb on - strandat 1044.431 kb on - strandat 1044.658 kb on - strand, within SMa1840at 1044.709 kb on + strand, within SMa1840at 1044.710 kb on - strand, within SMa1840at 1044.710 kb on - strand, within SMa1840at 1044.787 kb on + strandat 1044.787 kb on + strandat 1044.788 kb on - strandat 1044.858 kb on + strandat 1045.005 kb on + strandat 1045.103 kb on - strandat 1045.255 kb on - strandat 1045.255 kb on - strandat 1045.255 kb on - strandat 1045.255 kb on - strandat 1045.716 kb on + strand, within SMa1844at 1045.717 kb on - strand, within SMa1844

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,043,726 + SMa1838 0.31 -1.6
1,043,727 - SMa1838 0.31 -1.8
1,043,955 + SMa1838 0.56 -0.8
1,044,046 + SMa1838 0.66 -2.6
1,044,046 + SMa1838 0.66 -1.2
1,044,356 + -0.5
1,044,387 + -0.6
1,044,388 - -0.3
1,044,388 - -0.7
1,044,430 + +2.9
1,044,431 - -0.8
1,044,431 - -0.4
1,044,658 - SMa1840 0.58 +0.2
1,044,709 + SMa1840 0.73 -1.2
1,044,710 - SMa1840 0.73 -0.6
1,044,710 - SMa1840 0.73 -0.7
1,044,787 + -1.2
1,044,787 + +0.7
1,044,788 - -1.2
1,044,858 + -1.4
1,045,005 + -0.1
1,045,103 - -0.9
1,045,255 - +1.1
1,045,255 - +2.0
1,045,255 - -0.6
1,045,255 - -1.2
1,045,716 + SMa1844 0.40 -0.4
1,045,717 - SMa1844 0.40 -0.1

Or see this region's nucleotide sequence