Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1185 and SMa1186 overlap by 4 nucleotides SMa1186 and SMa1188 overlap by 8 nucleotides SMa1188 and SMa1191 are separated by 197 nucleotides
SMa1185: SMa1185 - NosY permease, at 652,157 to 652,984
SMa1185
SMa1186: SMa1186 - NosL copper chaperone, at 652,981 to 653,538
SMa1186
SMa1188: SMa1188 - NosX accesory protein, at 653,531 to 654,535
SMa1188
SMa1191: SMa1191 - nitric oxide dioxygenase, at 654,733 to 655,944
SMa1191
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 652.645 kb on - strand, within SMa1185 at 652.645 kb on - strand, within SMa1185 at 652.693 kb on + strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.718 kb on + strand, within SMa1185 at 652.818 kb on - strand, within SMa1185 at 652.834 kb on - strand, within SMa1185 at 652.980 kb on + strand at 652.980 kb on + strand at 652.980 kb on + strand at 652.981 kb on - strand at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.050 kb on - strand, within SMa1186 at 653.098 kb on + strand, within SMa1186 at 653.245 kb on + strand, within SMa1186 at 653.245 kb on + strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.246 kb on - strand, within SMa1186 at 653.255 kb on - strand, within SMa1186 at 653.323 kb on + strand, within SMa1186 at 653.324 kb on - strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.458 kb on + strand, within SMa1186 at 653.459 kb on - strand, within SMa1186 at 653.459 kb on - strand, within SMa1186 at 653.689 kb on - strand, within SMa1188 at 653.897 kb on - strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.478 kb on - strand at 654.621 kb on - strand at 654.675 kb on + strand at 654.675 kb on + strand at 654.676 kb on - strand at 654.676 kb on - strand at 654.676 kb on - strand at 654.820 kb on - strand at 654.865 kb on - strand, within SMa1191 at 654.917 kb on - strand, within SMa1191 at 654.917 kb on - strand, within SMa1191 at 654.922 kb on + strand, within SMa1191 at 654.981 kb on + strand, within SMa1191 at 655.016 kb on - strand, within SMa1191 at 655.109 kb on - strand, within SMa1191 at 655.109 kb on - strand, within SMa1191 at 655.127 kb on + strand, within SMa1191 at 655.127 kb on + strand, within SMa1191 at 655.128 kb on - strand, within SMa1191 at 655.154 kb on - strand, within SMa1191 at 655.301 kb on - strand, within SMa1191 at 655.302 kb on + strand, within SMa1191 at 655.303 kb on - strand, within SMa1191 at 655.303 kb on - strand, within SMa1191 at 655.326 kb on + strand, within SMa1191 at 655.326 kb on + strand, within SMa1191 at 655.327 kb on - strand, within SMa1191 at 655.327 kb on - strand, within SMa1191 at 655.347 kb on - strand, within SMa1191 at 655.387 kb on + strand, within SMa1191 at 655.499 kb on - strand, within SMa1191 at 655.510 kb on + strand, within SMa1191 at 655.511 kb on - strand, within SMa1191 at 655.511 kb on - strand, within SMa1191 at 655.520 kb on + strand, within SMa1191 at 655.521 kb on - strand, within SMa1191
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 652,645 - SMa1185 0.59 +1.3 652,645 - SMa1185 0.59 +0.0 652,693 + SMa1185 0.65 +2.7 652,694 - SMa1185 0.65 -2.1 652,694 - SMa1185 0.65 +0.4 652,718 + SMa1185 0.68 +0.2 652,818 - SMa1185 0.80 -0.1 652,834 - SMa1185 0.82 -0.1 652,980 + +0.0 652,980 + +5.8 652,980 + +0.9 652,981 - +0.7 653,049 + SMa1186 0.12 -0.3 653,049 + SMa1186 0.12 -0.5 653,049 + SMa1186 0.12 -0.1 653,050 - SMa1186 0.12 +1.4 653,098 + SMa1186 0.21 -0.1 653,245 + SMa1186 0.47 +0.2 653,245 + SMa1186 0.47 +0.9 653,246 - SMa1186 0.47 -1.8 653,246 - SMa1186 0.47 -0.5 653,246 - SMa1186 0.47 +0.4 653,246 - SMa1186 0.47 +1.1 653,255 - SMa1186 0.49 +0.6 653,323 + SMa1186 0.61 -0.4 653,324 - SMa1186 0.61 -0.6 653,458 + SMa1186 0.85 -0.6 653,458 + SMa1186 0.85 -1.2 653,458 + SMa1186 0.85 -2.2 653,459 - SMa1186 0.86 +1.2 653,459 - SMa1186 0.86 +0.5 653,689 - SMa1188 0.16 -0.4 653,897 - SMa1188 0.36 -1.4 653,921 + SMa1188 0.39 -1.1 653,921 + SMa1188 0.39 -0.6 653,922 - SMa1188 0.39 -0.8 653,922 - SMa1188 0.39 -0.1 653,922 - SMa1188 0.39 -1.3 654,078 + SMa1188 0.54 -0.8 654,078 + SMa1188 0.54 -1.1 654,478 - +0.7 654,621 - +0.2 654,675 + +0.4 654,675 + +0.8 654,676 - -0.0 654,676 - -0.4 654,676 - -0.6 654,820 - +2.3 654,865 - SMa1191 0.11 +1.7 654,917 - SMa1191 0.15 +0.7 654,917 - SMa1191 0.15 +0.4 654,922 + SMa1191 0.16 +1.0 654,981 + SMa1191 0.20 -0.3 655,016 - SMa1191 0.23 -2.4 655,109 - SMa1191 0.31 +0.2 655,109 - SMa1191 0.31 +0.3 655,127 + SMa1191 0.33 +0.4 655,127 + SMa1191 0.33 -0.3 655,128 - SMa1191 0.33 +1.2 655,154 - SMa1191 0.35 -0.4 655,301 - SMa1191 0.47 -1.1 655,302 + SMa1191 0.47 -1.1 655,303 - SMa1191 0.47 -0.3 655,303 - SMa1191 0.47 +0.7 655,326 + SMa1191 0.49 +0.4 655,326 + SMa1191 0.49 -1.3 655,327 - SMa1191 0.49 -1.1 655,327 - SMa1191 0.49 +0.4 655,347 - SMa1191 0.51 -0.4 655,387 + SMa1191 0.54 +1.3 655,499 - SMa1191 0.63 -0.3 655,510 + SMa1191 0.64 +0.7 655,511 - SMa1191 0.64 +0.6 655,511 - SMa1191 0.64 +0.4 655,520 + SMa1191 0.65 -0.7 655,521 - SMa1191 0.65 -0.1
Or see this region's nucleotide sequence