Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0866 and SMa0868 are separated by 14 nucleotides SMa0868 and SMa0869 overlap by 4 nucleotides SMa0869 and SMa0870 are separated by 265 nucleotides
SMa0866: SMa0866 - NodC N-acetylglucosaminyltransferase, at 479,009 to 480,289
SMa0866
SMa0868: SMa0868 - NodB chitooligosaccharide deacetylase, at 480,304 to 480,957
SMa0868
SMa0869: SMa0869 - acyltransferase, at 480,954 to 481,544
SMa0869
SMa0870: SMa0870 - NodD1 nod-box dependent transcriptional activator, at 481,810 to 482,736
SMa0870
Position (kb) 480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 479.304 kb on - strand, within SMa0866 at 479.470 kb on - strand, within SMa0866 at 479.505 kb on - strand, within SMa0866 at 479.521 kb on - strand, within SMa0866 at 479.650 kb on - strand, within SMa0866 at 479.653 kb on + strand, within SMa0866 at 479.654 kb on - strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.678 kb on - strand, within SMa0866 at 479.983 kb on - strand, within SMa0866 at 479.993 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.205 kb on - strand at 480.206 kb on + strand at 480.246 kb on + strand at 480.286 kb on - strand at 480.402 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.539 kb on - strand, within SMa0868 at 480.596 kb on + strand, within SMa0868 at 480.598 kb on - strand, within SMa0868 at 480.786 kb on - strand, within SMa0868 at 480.822 kb on - strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.892 kb on - strand at 480.937 kb on + strand at 480.938 kb on - strand at 480.942 kb on - strand at 480.958 kb on - strand at 481.138 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.276 kb on - strand, within SMa0869 at 481.316 kb on + strand, within SMa0869 at 481.316 kb on + strand, within SMa0869 at 481.317 kb on - strand, within SMa0869 at 481.518 kb on + strand at 481.519 kb on - strand at 481.546 kb on + strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.654 kb on - strand at 481.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 479,304 - SMa0866 0.23 -0.2 479,470 - SMa0866 0.36 +0.3 479,505 - SMa0866 0.39 +0.0 479,521 - SMa0866 0.40 +0.3 479,650 - SMa0866 0.50 -0.2 479,653 + SMa0866 0.50 -0.1 479,654 - SMa0866 0.50 +0.5 479,677 + SMa0866 0.52 +0.6 479,677 + SMa0866 0.52 +2.3 479,678 - SMa0866 0.52 +0.3 479,983 - SMa0866 0.76 +0.2 479,993 + SMa0866 0.77 +0.2 480,039 + SMa0866 0.80 +1.4 480,039 + SMa0866 0.80 +0.1 480,205 - -0.4 480,206 + -0.1 480,246 + +0.5 480,286 - -0.8 480,402 + SMa0868 0.15 -0.3 480,538 + SMa0868 0.36 -0.2 480,538 + SMa0868 0.36 -1.0 480,538 + SMa0868 0.36 +0.1 480,539 - SMa0868 0.36 -0.2 480,596 + SMa0868 0.45 +0.2 480,598 - SMa0868 0.45 -0.4 480,786 - SMa0868 0.74 +0.4 480,822 - SMa0868 0.79 +1.4 480,889 + SMa0868 0.89 -2.1 480,889 + SMa0868 0.89 -0.7 480,891 + SMa0868 0.90 +0.5 480,891 + SMa0868 0.90 -0.4 480,892 - -0.3 480,937 + -0.6 480,938 - -0.4 480,942 - -3.0 480,958 - +0.2 481,138 + SMa0869 0.31 +0.4 481,273 + SMa0869 0.54 -0.8 481,273 + SMa0869 0.54 +0.2 481,276 - SMa0869 0.54 +0.2 481,316 + SMa0869 0.61 -0.9 481,316 + SMa0869 0.61 +0.2 481,317 - SMa0869 0.61 -0.1 481,518 + -1.2 481,519 - -0.4 481,546 + +1.2 481,547 - +1.7 481,547 - -1.8 481,547 - -1.2 481,547 - +0.9 481,654 - -1.2 481,740 + +2.8
Or see this region's nucleotide sequence