Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0810 and SMa0811 are separated by 187 nucleotides SMa0811 and SMa0814 are separated by 30 nucleotides SMa0814 and SMa0815 are separated by 216 nucleotides
SMa0810: SMa0810 - nitrogen fixation protein FixU, at 443,587 to 443,793
SMa0810
SMa0811: SMa0811 - FdxN ferredoxin, at 443,981 to 444,175
SMa0811
SMa0814: SMa0814 - NifB FeMo cofactor biosynthesis protein, at 444,206 to 445,678
SMa0814
SMa0815: SMa0815 - Fis family transcriptional regulator, at 445,895 to 447,520
SMa0815
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 443.242 kb on + strand at 443.243 kb on - strand at 443.310 kb on + strand at 443.364 kb on - strand at 443.366 kb on + strand at 443.398 kb on - strand at 443.461 kb on + strand at 443.462 kb on - strand at 443.557 kb on - strand at 443.681 kb on - strand, within SMa0810 at 443.695 kb on + strand, within SMa0810 at 443.696 kb on - strand, within SMa0810 at 443.751 kb on - strand, within SMa0810 at 443.751 kb on - strand, within SMa0810 at 443.855 kb on + strand at 443.855 kb on + strand at 443.856 kb on - strand at 443.856 kb on - strand at 443.861 kb on + strand at 443.861 kb on + strand at 443.861 kb on + strand at 443.862 kb on - strand at 443.862 kb on - strand at 443.862 kb on - strand at 443.862 kb on - strand at 443.944 kb on + strand at 443.945 kb on - strand at 443.945 kb on - strand at 443.968 kb on + strand at 443.968 kb on + strand at 443.968 kb on + strand at 443.968 kb on + strand at 443.969 kb on - strand at 443.969 kb on - strand at 444.082 kb on - strand, within SMa0811 at 444.179 kb on - strand at 444.224 kb on + strand at 444.283 kb on - strand at 444.283 kb on - strand at 444.343 kb on - strand at 444.375 kb on - strand, within SMa0814 at 444.375 kb on - strand, within SMa0814 at 444.493 kb on - strand, within SMa0814 at 444.493 kb on - strand, within SMa0814 at 444.493 kb on - strand, within SMa0814 at 444.579 kb on + strand, within SMa0814 at 444.580 kb on - strand, within SMa0814 at 444.593 kb on + strand, within SMa0814 at 444.623 kb on + strand, within SMa0814 at 444.624 kb on - strand at 444.624 kb on - strand, within SMa0814 at 444.684 kb on + strand, within SMa0814 at 444.684 kb on + strand, within SMa0814 at 444.685 kb on - strand, within SMa0814 at 444.685 kb on - strand, within SMa0814 at 444.685 kb on - strand, within SMa0814 at 444.689 kb on + strand, within SMa0814 at 444.690 kb on - strand, within SMa0814 at 444.749 kb on + strand, within SMa0814 at 444.800 kb on + strand, within SMa0814 at 444.801 kb on - strand, within SMa0814 at 444.801 kb on - strand, within SMa0814 at 444.861 kb on + strand, within SMa0814 at 444.862 kb on - strand, within SMa0814 at 444.864 kb on + strand, within SMa0814 at 444.864 kb on + strand, within SMa0814 at 444.875 kb on + strand, within SMa0814 at 444.876 kb on - strand, within SMa0814 at 444.899 kb on + strand, within SMa0814 at 445.096 kb on - strand, within SMa0814 at 445.232 kb on + strand, within SMa0814 at 445.232 kb on + strand, within SMa0814 at 445.291 kb on - strand, within SMa0814 at 445.446 kb on + strand, within SMa0814 at 445.451 kb on - strand, within SMa0814 at 445.500 kb on + strand, within SMa0814 at 445.563 kb on - strand at 445.563 kb on - strand at 445.563 kb on - strand at 445.563 kb on - strand at 445.637 kb on - strand at 445.637 kb on - strand at 445.637 kb on - strand at 445.896 kb on + strand at 445.897 kb on - strand at 445.897 kb on - strand at 446.407 kb on + strand, within SMa0815 at 446.407 kb on + strand, within SMa0815 at 446.408 kb on - strand, within SMa0815 at 446.408 kb on - strand, within SMa0815 at 446.448 kb on + strand, within SMa0815 at 446.449 kb on - strand, within SMa0815 at 446.573 kb on + strand, within SMa0815 at 446.573 kb on + strand, within SMa0815 at 446.574 kb on - strand, within SMa0815
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 443,242 + -2.9 443,243 - -0.2 443,310 + -1.7 443,364 - -0.3 443,366 + -0.4 443,398 - +0.1 443,461 + +0.3 443,462 - -0.8 443,557 - +1.2 443,681 - SMa0810 0.45 -1.3 443,695 + SMa0810 0.52 -0.3 443,696 - SMa0810 0.53 -2.3 443,751 - SMa0810 0.79 +0.9 443,751 - SMa0810 0.79 +0.5 443,855 + -2.8 443,855 + -0.6 443,856 - +0.4 443,856 - +0.0 443,861 + -0.3 443,861 + -0.8 443,861 + -1.1 443,862 - +0.1 443,862 - +0.2 443,862 - -2.5 443,862 - +0.7 443,944 + -0.1 443,945 - -0.5 443,945 - -0.6 443,968 + -0.1 443,968 + -2.3 443,968 + +0.1 443,968 + -0.7 443,969 - +0.0 443,969 - +0.7 444,082 - SMa0811 0.52 +0.4 444,179 - -0.9 444,224 + +0.3 444,283 - +0.3 444,283 - -0.3 444,343 - -1.3 444,375 - SMa0814 0.11 +1.2 444,375 - SMa0814 0.11 -1.3 444,493 - SMa0814 0.19 +2.4 444,493 - SMa0814 0.19 -0.3 444,493 - SMa0814 0.19 -0.3 444,579 + SMa0814 0.25 +0.5 444,580 - SMa0814 0.25 -0.5 444,593 + SMa0814 0.26 +2.0 444,623 + SMa0814 0.28 -0.1 444,624 - +1.2 444,624 - SMa0814 0.28 -1.5 444,684 + SMa0814 0.32 -1.8 444,684 + SMa0814 0.32 -1.5 444,685 - SMa0814 0.33 +1.6 444,685 - SMa0814 0.33 +0.9 444,685 - SMa0814 0.33 +3.9 444,689 + SMa0814 0.33 +0.3 444,690 - SMa0814 0.33 -1.9 444,749 + SMa0814 0.37 +0.1 444,800 + SMa0814 0.40 +0.1 444,801 - SMa0814 0.40 -0.6 444,801 - SMa0814 0.40 -0.4 444,861 + SMa0814 0.44 -0.5 444,862 - SMa0814 0.45 -0.3 444,864 + SMa0814 0.45 +1.2 444,864 + SMa0814 0.45 +1.0 444,875 + SMa0814 0.45 +0.4 444,876 - SMa0814 0.45 -0.1 444,899 + SMa0814 0.47 -0.8 445,096 - SMa0814 0.60 +0.6 445,232 + SMa0814 0.70 -0.1 445,232 + SMa0814 0.70 +0.8 445,291 - SMa0814 0.74 -0.2 445,446 + SMa0814 0.84 -0.5 445,451 - SMa0814 0.85 -1.1 445,500 + SMa0814 0.88 +0.0 445,563 - -0.2 445,563 - +0.4 445,563 - -0.6 445,563 - +0.3 445,637 - +0.1 445,637 - +0.3 445,637 - +0.4 445,896 + -1.4 445,897 - -0.4 445,897 - -0.9 446,407 + SMa0815 0.31 +0.0 446,407 + SMa0815 0.31 +2.8 446,408 - SMa0815 0.32 +0.0 446,408 - SMa0815 0.32 -0.5 446,448 + SMa0815 0.34 +0.8 446,449 - SMa0815 0.34 -1.1 446,573 + SMa0815 0.42 +0.3 446,573 + SMa0815 0.42 -1.1 446,574 - SMa0815 0.42 +0.7
Or see this region's nucleotide sequence