Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0270 and SMa0271 overlap by 35 nucleotides SMa0271 and SMa0273 are separated by 29 nucleotides
SMa0270: SMa0270 - ABC transporter ATP-binding protein, at 151,172 to 152,764
SMa0270
SMa0271: SMa0271 - ABC transporter permease, at 152,730 to 153,725
SMa0271
SMa0273: SMa0273 - ABC transporter substrate-binding protein, at 153,755 to 154,720
SMa0273
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.802 kb on + strand, within SMa0270 at 151.802 kb on + strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.952 kb on + strand, within SMa0270 at 151.960 kb on + strand, within SMa0270 at 152.194 kb on - strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.214 kb on - strand, within SMa0270 at 152.214 kb on - strand, within SMa0270 at 152.269 kb on + strand, within SMa0270 at 152.270 kb on - strand, within SMa0270 at 152.293 kb on + strand, within SMa0270 at 152.430 kb on + strand, within SMa0270 at 152.430 kb on + strand, within SMa0270 at 152.523 kb on - strand, within SMa0270 at 152.596 kb on - strand, within SMa0270 at 152.684 kb on + strand at 152.762 kb on + strand at 152.763 kb on - strand at 152.824 kb on + strand at 152.824 kb on + strand at 152.825 kb on - strand at 152.825 kb on - strand at 153.104 kb on + strand, within SMa0271 at 153.232 kb on - strand, within SMa0271 at 153.233 kb on + strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.244 kb on - strand, within SMa0271 at 153.322 kb on - strand, within SMa0271 at 153.333 kb on + strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.651 kb on + strand at 153.651 kb on + strand at 153.711 kb on - strand at 153.763 kb on + strand at 153.763 kb on + strand at 153.764 kb on - strand at 153.764 kb on - strand at 153.906 kb on - strand, within SMa0273 at 154.160 kb on + strand, within SMa0273 at 154.160 kb on + strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.340 kb on + strand, within SMa0273 at 154.341 kb on - strand, within SMa0273 at 154.385 kb on + strand, within SMa0273 at 154.385 kb on + strand, within SMa0273 at 154.397 kb on + strand, within SMa0273 at 154.571 kb on + strand, within SMa0273 at 154.602 kb on - strand, within SMa0273 at 154.603 kb on + strand, within SMa0273 at 154.604 kb on - strand, within SMa0273 at 154.604 kb on - strand, within SMa0273 at 154.637 kb on - strand at 154.669 kb on + strand at 154.670 kb on - strand at 154.697 kb on + strand at 154.698 kb on - strand at 154.698 kb on - strand at 154.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 151,802 + SMa0270 0.40 +0.6 151,802 + SMa0270 0.40 -0.8 151,803 - SMa0270 0.40 +1.4 151,803 - SMa0270 0.40 -1.5 151,803 - SMa0270 0.40 -2.4 151,952 + SMa0270 0.49 -1.2 151,960 + SMa0270 0.49 +2.6 152,194 - SMa0270 0.64 -0.1 152,213 + SMa0270 0.65 -0.3 152,213 + SMa0270 0.65 -0.3 152,213 + SMa0270 0.65 +0.5 152,214 - SMa0270 0.65 +0.7 152,214 - SMa0270 0.65 +0.3 152,269 + SMa0270 0.69 -1.1 152,270 - SMa0270 0.69 +1.3 152,293 + SMa0270 0.70 +2.1 152,430 + SMa0270 0.79 +0.2 152,430 + SMa0270 0.79 -1.3 152,523 - SMa0270 0.85 -1.6 152,596 - SMa0270 0.89 -0.1 152,684 + -0.3 152,762 + +0.4 152,763 - +1.3 152,824 + -0.7 152,824 + +0.4 152,825 - -0.6 152,825 - -0.5 153,104 + SMa0271 0.38 -0.8 153,232 - SMa0271 0.50 -0.0 153,233 + SMa0271 0.51 -0.7 153,234 - SMa0271 0.51 -0.3 153,234 - SMa0271 0.51 -2.0 153,244 - SMa0271 0.52 -1.0 153,322 - SMa0271 0.59 -1.5 153,333 + SMa0271 0.61 -0.2 153,334 - SMa0271 0.61 -1.0 153,334 - SMa0271 0.61 -1.1 153,462 + SMa0271 0.73 -0.3 153,462 + SMa0271 0.73 -0.3 153,462 + SMa0271 0.73 -1.4 153,463 - SMa0271 0.74 +0.0 153,463 - SMa0271 0.74 +0.2 153,651 + -1.2 153,651 + -0.1 153,711 - +0.1 153,763 + +0.4 153,763 + +0.1 153,764 - -1.1 153,764 - -0.6 153,906 - SMa0273 0.16 -1.9 154,160 + SMa0273 0.42 -2.0 154,160 + SMa0273 0.42 -0.5 154,161 - SMa0273 0.42 -1.0 154,161 - SMa0273 0.42 -0.7 154,161 - SMa0273 0.42 -0.1 154,161 - SMa0273 0.42 -0.2 154,340 + SMa0273 0.61 +2.2 154,341 - SMa0273 0.61 -0.9 154,385 + SMa0273 0.65 -0.2 154,385 + SMa0273 0.65 +1.3 154,397 + SMa0273 0.66 +2.7 154,571 + SMa0273 0.84 +0.7 154,602 - SMa0273 0.88 -0.5 154,603 + SMa0273 0.88 +0.2 154,604 - SMa0273 0.88 -0.1 154,604 - SMa0273 0.88 -0.5 154,637 - +2.3 154,669 + -0.1 154,670 - +1.2 154,697 + -0.5 154,698 - +0.3 154,698 - +1.0 154,698 - +0.4
Or see this region's nucleotide sequence