Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0163 and SMa0164 overlap by 4 nucleotides SMa0164 and SMa0166 are separated by 21 nucleotides SMa0166 and SMa0168 are separated by 83 nucleotides
SMa0163: SMa0163 - PilQ2 pilus assembly protein, at 89,324 to 90,724
SMa0163
SMa0164: SMa0164 - hypothetical protein, at 90,721 to 91,017
SMa0164
SMa0166: SMa0166 - hypothetical protein, at 91,039 to 91,569
SMa0166
SMa0168: SMa0168 - hypothetical protein, at 91,653 to 92,465
SMa0168
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 89.722 kb on - strand, within SMa0163 at 89.780 kb on - strand, within SMa0163 at 89.839 kb on + strand, within SMa0163 at 89.840 kb on - strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.936 kb on + strand, within SMa0163 at 89.992 kb on + strand, within SMa0163 at 90.036 kb on - strand, within SMa0163 at 90.109 kb on - strand, within SMa0163 at 90.188 kb on - strand, within SMa0163 at 90.197 kb on + strand, within SMa0163 at 90.197 kb on + strand, within SMa0163 at 90.198 kb on - strand, within SMa0163 at 90.199 kb on + strand, within SMa0163 at 90.320 kb on - strand at 90.491 kb on + strand, within SMa0163 at 90.492 kb on - strand, within SMa0163 at 90.940 kb on + strand, within SMa0164 at 90.940 kb on + strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.942 kb on + strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 91.016 kb on - strand at 91.016 kb on - strand at 91.016 kb on - strand at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.659 kb on - strand at 91.723 kb on - strand at 91.723 kb on - strand at 91.796 kb on + strand, within SMa0168
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 89,722 - SMa0163 0.28 -0.7 89,780 - SMa0163 0.33 -0.1 89,839 + SMa0163 0.37 -0.9 89,840 - SMa0163 0.37 +0.4 89,862 + SMa0163 0.38 -1.2 89,862 + SMa0163 0.38 -0.8 89,862 + SMa0163 0.38 -0.7 89,936 + SMa0163 0.44 +0.2 89,992 + SMa0163 0.48 +0.8 90,036 - SMa0163 0.51 +0.3 90,109 - SMa0163 0.56 +1.2 90,188 - SMa0163 0.62 -0.4 90,197 + SMa0163 0.62 -0.4 90,197 + SMa0163 0.62 +3.0 90,198 - SMa0163 0.62 -0.5 90,199 + SMa0163 0.62 +0.0 90,320 - +3.0 90,491 + SMa0163 0.83 +0.3 90,492 - SMa0163 0.83 -0.9 90,940 + SMa0164 0.74 +0.5 90,940 + SMa0164 0.74 -2.1 90,941 - SMa0164 0.74 +0.7 90,941 - SMa0164 0.74 -0.2 90,942 + SMa0164 0.74 -2.4 90,943 - SMa0164 0.75 -0.4 90,943 - SMa0164 0.75 +1.1 91,016 - +1.1 91,016 - -1.2 91,016 - -1.0 91,354 + SMa0166 0.59 -0.8 91,354 + SMa0166 0.59 -1.5 91,354 + SMa0166 0.59 -0.8 91,354 + SMa0166 0.59 +0.7 91,355 - SMa0166 0.60 -0.6 91,355 - SMa0166 0.60 -0.6 91,659 - -0.9 91,723 - +0.1 91,723 - +1.3 91,796 + SMa0168 0.18 -0.8
Or see this region's nucleotide sequence