Experiment: perchlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21543 and SM_b21544 are separated by 124 nucleotides SM_b21544 and SM_b21545 are separated by 88 nucleotides SM_b21545 and SM_b21546 overlap by 13 nucleotides
SM_b21543: SM_b21543 - outer membrane secretion protein, at 1,074,957 to 1,078,295
_b21543
SM_b21544: SM_b21544 - hypothetical protein, at 1,078,420 to 1,078,818
_b21544
SM_b21545: SM_b21545 - two-component response regulator protein, at 1,078,907 to 1,079,689
_b21545
SM_b21546: SM_b21546 - two-component sensor histidine kinase, at 1,079,677 to 1,080,828
_b21546
Position (kb)
1078
1079
1080 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1077.983 kb on + strand at 1077.983 kb on + strand at 1077.984 kb on - strand at 1077.984 kb on - strand at 1078.173 kb on + strand at 1078.174 kb on - strand at 1078.200 kb on + strand at 1078.200 kb on + strand at 1078.200 kb on + strand at 1078.200 kb on + strand at 1078.240 kb on - strand at 1078.286 kb on + strand at 1078.290 kb on - strand at 1078.290 kb on - strand at 1078.294 kb on - strand at 1078.294 kb on - strand at 1078.294 kb on - strand at 1078.356 kb on + strand at 1078.370 kb on + strand at 1078.384 kb on + strand at 1078.448 kb on + strand at 1078.449 kb on - strand at 1078.573 kb on + strand, within SM_b21544 at 1078.789 kb on + strand at 1078.789 kb on + strand at 1078.789 kb on + strand at 1078.789 kb on + strand at 1078.813 kb on + strand at 1078.813 kb on + strand at 1078.813 kb on + strand at 1078.813 kb on + strand at 1078.814 kb on - strand at 1078.814 kb on - strand at 1078.830 kb on + strand at 1078.830 kb on + strand at 1078.831 kb on - strand at 1078.847 kb on + strand at 1078.847 kb on + strand at 1078.996 kb on + strand, within SM_b21545 at 1078.996 kb on + strand, within SM_b21545 at 1079.069 kb on + strand, within SM_b21545 at 1079.072 kb on - strand, within SM_b21545 at 1079.144 kb on + strand, within SM_b21545 at 1079.439 kb on + strand, within SM_b21545 at 1079.439 kb on + strand at 1079.440 kb on - strand, within SM_b21545 at 1079.440 kb on - strand, within SM_b21545 at 1079.765 kb on + strand at 1079.884 kb on + strand, within SM_b21546 at 1079.885 kb on - strand, within SM_b21546 at 1079.885 kb on - strand, within SM_b21546 at 1080.048 kb on + strand, within SM_b21546 at 1080.056 kb on + strand, within SM_b21546 at 1080.057 kb on - strand, within SM_b21546 at 1080.057 kb on - strand, within SM_b21546 at 1080.122 kb on + strand, within SM_b21546 at 1080.131 kb on + strand, within SM_b21546 at 1080.131 kb on + strand, within SM_b21546 at 1080.335 kb on + strand, within SM_b21546 at 1080.336 kb on - strand, within SM_b21546 at 1080.360 kb on + strand, within SM_b21546 at 1080.361 kb on - strand, within SM_b21546 at 1080.367 kb on - strand, within SM_b21546 at 1080.367 kb on - strand, within SM_b21546 at 1080.368 kb on + strand, within SM_b21546 at 1080.368 kb on + strand, within SM_b21546 at 1080.368 kb on + strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.385 kb on + strand, within SM_b21546 at 1080.405 kb on - strand, within SM_b21546 at 1080.548 kb on + strand, within SM_b21546 at 1080.558 kb on + strand, within SM_b21546 at 1080.559 kb on - strand, within SM_b21546 at 1080.633 kb on + strand, within SM_b21546 at 1080.633 kb on + strand, within SM_b21546
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 10 mM remove 1,077,983 + -0.9 1,077,983 + -0.9 1,077,984 - +0.4 1,077,984 - +0.0 1,078,173 + -0.5 1,078,174 - +0.3 1,078,200 + -1.2 1,078,200 + -0.8 1,078,200 + -0.4 1,078,200 + -1.5 1,078,240 - +0.0 1,078,286 + -0.6 1,078,290 - +1.0 1,078,290 - -0.6 1,078,294 - -1.0 1,078,294 - +1.8 1,078,294 - +0.4 1,078,356 + +0.5 1,078,370 + +0.9 1,078,384 + +0.5 1,078,448 + -0.3 1,078,449 - -0.2 1,078,573 + SM_b21544 0.38 -0.1 1,078,789 + +0.6 1,078,789 + +0.6 1,078,789 + -0.0 1,078,789 + -0.5 1,078,813 + +0.7 1,078,813 + -0.9 1,078,813 + -1.1 1,078,813 + -2.7 1,078,814 - -0.1 1,078,814 - +0.6 1,078,830 + +0.7 1,078,830 + -1.6 1,078,831 - +1.5 1,078,847 + +0.3 1,078,847 + -1.1 1,078,996 + SM_b21545 0.11 +0.4 1,078,996 + SM_b21545 0.11 -1.3 1,079,069 + SM_b21545 0.21 -1.3 1,079,072 - SM_b21545 0.21 -0.6 1,079,144 + SM_b21545 0.30 -0.3 1,079,439 + SM_b21545 0.68 -1.6 1,079,439 + +1.8 1,079,440 - SM_b21545 0.68 +0.6 1,079,440 - SM_b21545 0.68 -1.4 1,079,765 + +0.4 1,079,884 + SM_b21546 0.18 +1.0 1,079,885 - SM_b21546 0.18 +0.4 1,079,885 - SM_b21546 0.18 -0.7 1,080,048 + SM_b21546 0.32 -0.3 1,080,056 + SM_b21546 0.33 +0.3 1,080,057 - SM_b21546 0.33 +0.5 1,080,057 - SM_b21546 0.33 -1.4 1,080,122 + SM_b21546 0.39 -0.0 1,080,131 + SM_b21546 0.39 +1.8 1,080,131 + SM_b21546 0.39 +0.1 1,080,335 + SM_b21546 0.57 -0.4 1,080,336 - SM_b21546 0.57 -0.1 1,080,360 + SM_b21546 0.59 -1.2 1,080,361 - SM_b21546 0.59 -1.6 1,080,367 - SM_b21546 0.60 -2.1 1,080,367 - SM_b21546 0.60 +1.4 1,080,368 + SM_b21546 0.60 -0.1 1,080,368 + SM_b21546 0.60 +1.2 1,080,368 + SM_b21546 0.60 -1.0 1,080,369 - SM_b21546 0.60 -0.2 1,080,369 - SM_b21546 0.60 -0.5 1,080,369 - SM_b21546 0.60 -1.7 1,080,369 - SM_b21546 0.60 -0.7 1,080,369 - SM_b21546 0.60 +0.2 1,080,371 + SM_b21546 0.60 -0.5 1,080,371 + SM_b21546 0.60 +0.2 1,080,371 + SM_b21546 0.60 -1.7 1,080,371 + SM_b21546 0.60 +0.1 1,080,372 - SM_b21546 0.60 +0.0 1,080,372 - SM_b21546 0.60 +0.7 1,080,372 - SM_b21546 0.60 -1.5 1,080,372 - SM_b21546 0.60 -0.8 1,080,372 - SM_b21546 0.60 -1.3 1,080,372 - SM_b21546 0.60 +0.1 1,080,372 - SM_b21546 0.60 +3.0 1,080,372 - SM_b21546 0.60 +0.6 1,080,372 - SM_b21546 0.60 -0.1 1,080,385 + SM_b21546 0.61 +0.1 1,080,405 - SM_b21546 0.63 -0.2 1,080,548 + SM_b21546 0.76 +0.6 1,080,558 + SM_b21546 0.76 -0.6 1,080,559 - SM_b21546 0.77 +0.2 1,080,633 + SM_b21546 0.83 -0.4 1,080,633 + SM_b21546 0.83 -0.5
Or see this region's nucleotide sequence