Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21545

Experiment: perchlorate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21543 and SM_b21544 are separated by 124 nucleotidesSM_b21544 and SM_b21545 are separated by 88 nucleotidesSM_b21545 and SM_b21546 overlap by 13 nucleotides SM_b21543: SM_b21543 - outer membrane secretion protein, at 1,074,957 to 1,078,295 _b21543 SM_b21544: SM_b21544 - hypothetical protein, at 1,078,420 to 1,078,818 _b21544 SM_b21545: SM_b21545 - two-component response regulator protein, at 1,078,907 to 1,079,689 _b21545 SM_b21546: SM_b21546 - two-component sensor histidine kinase, at 1,079,677 to 1,080,828 _b21546 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1077.983 kb on + strandat 1077.983 kb on + strandat 1077.984 kb on - strandat 1077.984 kb on - strandat 1078.173 kb on + strandat 1078.174 kb on - strandat 1078.200 kb on + strandat 1078.200 kb on + strandat 1078.200 kb on + strandat 1078.200 kb on + strandat 1078.240 kb on - strandat 1078.286 kb on + strandat 1078.290 kb on - strandat 1078.290 kb on - strandat 1078.294 kb on - strandat 1078.294 kb on - strandat 1078.294 kb on - strandat 1078.356 kb on + strandat 1078.370 kb on + strandat 1078.384 kb on + strandat 1078.448 kb on + strandat 1078.449 kb on - strandat 1078.573 kb on + strand, within SM_b21544at 1078.789 kb on + strandat 1078.789 kb on + strandat 1078.789 kb on + strandat 1078.789 kb on + strandat 1078.813 kb on + strandat 1078.813 kb on + strandat 1078.813 kb on + strandat 1078.813 kb on + strandat 1078.814 kb on - strandat 1078.814 kb on - strandat 1078.830 kb on + strandat 1078.830 kb on + strandat 1078.831 kb on - strandat 1078.847 kb on + strandat 1078.847 kb on + strandat 1078.996 kb on + strand, within SM_b21545at 1078.996 kb on + strand, within SM_b21545at 1079.069 kb on + strand, within SM_b21545at 1079.072 kb on - strand, within SM_b21545at 1079.144 kb on + strand, within SM_b21545at 1079.439 kb on + strand, within SM_b21545at 1079.439 kb on + strandat 1079.440 kb on - strand, within SM_b21545at 1079.440 kb on - strand, within SM_b21545at 1079.765 kb on + strandat 1079.884 kb on + strand, within SM_b21546at 1079.885 kb on - strand, within SM_b21546at 1079.885 kb on - strand, within SM_b21546at 1080.048 kb on + strand, within SM_b21546at 1080.056 kb on + strand, within SM_b21546at 1080.057 kb on - strand, within SM_b21546at 1080.057 kb on - strand, within SM_b21546at 1080.122 kb on + strand, within SM_b21546at 1080.131 kb on + strand, within SM_b21546at 1080.131 kb on + strand, within SM_b21546at 1080.335 kb on + strand, within SM_b21546at 1080.336 kb on - strand, within SM_b21546at 1080.360 kb on + strand, within SM_b21546at 1080.361 kb on - strand, within SM_b21546at 1080.367 kb on - strand, within SM_b21546at 1080.367 kb on - strand, within SM_b21546at 1080.368 kb on + strand, within SM_b21546at 1080.368 kb on + strand, within SM_b21546at 1080.368 kb on + strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.385 kb on + strand, within SM_b21546at 1080.405 kb on - strand, within SM_b21546at 1080.548 kb on + strand, within SM_b21546at 1080.558 kb on + strand, within SM_b21546at 1080.559 kb on - strand, within SM_b21546at 1080.633 kb on + strand, within SM_b21546at 1080.633 kb on + strand, within SM_b21546

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
remove
1,077,983 + -0.9
1,077,983 + -0.9
1,077,984 - +0.4
1,077,984 - +0.0
1,078,173 + -0.5
1,078,174 - +0.3
1,078,200 + -1.2
1,078,200 + -0.8
1,078,200 + -0.4
1,078,200 + -1.5
1,078,240 - +0.0
1,078,286 + -0.6
1,078,290 - +1.0
1,078,290 - -0.6
1,078,294 - -1.0
1,078,294 - +1.8
1,078,294 - +0.4
1,078,356 + +0.5
1,078,370 + +0.9
1,078,384 + +0.5
1,078,448 + -0.3
1,078,449 - -0.2
1,078,573 + SM_b21544 0.38 -0.1
1,078,789 + +0.6
1,078,789 + +0.6
1,078,789 + -0.0
1,078,789 + -0.5
1,078,813 + +0.7
1,078,813 + -0.9
1,078,813 + -1.1
1,078,813 + -2.7
1,078,814 - -0.1
1,078,814 - +0.6
1,078,830 + +0.7
1,078,830 + -1.6
1,078,831 - +1.5
1,078,847 + +0.3
1,078,847 + -1.1
1,078,996 + SM_b21545 0.11 +0.4
1,078,996 + SM_b21545 0.11 -1.3
1,079,069 + SM_b21545 0.21 -1.3
1,079,072 - SM_b21545 0.21 -0.6
1,079,144 + SM_b21545 0.30 -0.3
1,079,439 + SM_b21545 0.68 -1.6
1,079,439 + +1.8
1,079,440 - SM_b21545 0.68 +0.6
1,079,440 - SM_b21545 0.68 -1.4
1,079,765 + +0.4
1,079,884 + SM_b21546 0.18 +1.0
1,079,885 - SM_b21546 0.18 +0.4
1,079,885 - SM_b21546 0.18 -0.7
1,080,048 + SM_b21546 0.32 -0.3
1,080,056 + SM_b21546 0.33 +0.3
1,080,057 - SM_b21546 0.33 +0.5
1,080,057 - SM_b21546 0.33 -1.4
1,080,122 + SM_b21546 0.39 -0.0
1,080,131 + SM_b21546 0.39 +1.8
1,080,131 + SM_b21546 0.39 +0.1
1,080,335 + SM_b21546 0.57 -0.4
1,080,336 - SM_b21546 0.57 -0.1
1,080,360 + SM_b21546 0.59 -1.2
1,080,361 - SM_b21546 0.59 -1.6
1,080,367 - SM_b21546 0.60 -2.1
1,080,367 - SM_b21546 0.60 +1.4
1,080,368 + SM_b21546 0.60 -0.1
1,080,368 + SM_b21546 0.60 +1.2
1,080,368 + SM_b21546 0.60 -1.0
1,080,369 - SM_b21546 0.60 -0.2
1,080,369 - SM_b21546 0.60 -0.5
1,080,369 - SM_b21546 0.60 -1.7
1,080,369 - SM_b21546 0.60 -0.7
1,080,369 - SM_b21546 0.60 +0.2
1,080,371 + SM_b21546 0.60 -0.5
1,080,371 + SM_b21546 0.60 +0.2
1,080,371 + SM_b21546 0.60 -1.7
1,080,371 + SM_b21546 0.60 +0.1
1,080,372 - SM_b21546 0.60 +0.0
1,080,372 - SM_b21546 0.60 +0.7
1,080,372 - SM_b21546 0.60 -1.5
1,080,372 - SM_b21546 0.60 -0.8
1,080,372 - SM_b21546 0.60 -1.3
1,080,372 - SM_b21546 0.60 +0.1
1,080,372 - SM_b21546 0.60 +3.0
1,080,372 - SM_b21546 0.60 +0.6
1,080,372 - SM_b21546 0.60 -0.1
1,080,385 + SM_b21546 0.61 +0.1
1,080,405 - SM_b21546 0.63 -0.2
1,080,548 + SM_b21546 0.76 +0.6
1,080,558 + SM_b21546 0.76 -0.6
1,080,559 - SM_b21546 0.77 +0.2
1,080,633 + SM_b21546 0.83 -0.4
1,080,633 + SM_b21546 0.83 -0.5

Or see this region's nucleotide sequence